View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3121_low_42 (Length: 227)

Name: NF3121_low_42
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3121_low_42
NF3121_low_42
[»] chr4 (7 HSPs)
chr4 (21-223)||(4337083-4337285)
chr4 (21-223)||(4319205-4319416)
chr4 (107-212)||(4122642-4122747)
chr4 (107-223)||(4132616-4132729)
chr4 (107-214)||(4346553-4346660)
chr4 (107-214)||(4362742-4362849)
chr4 (25-57)||(4132540-4132572)
[»] chr6 (7 HSPs)
chr6 (107-223)||(5065447-5065563)
chr6 (112-222)||(5253715-5253825)
chr6 (107-223)||(5126627-5126743)
chr6 (107-213)||(5177930-5178036)
chr6 (107-213)||(5279755-5279861)
chr6 (107-223)||(5346210-5346326)
chr6 (107-213)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (107-223)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (119-223)||(47985403-47985507)
chr3 (119-223)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 4337285 - 4337083
Alignment:
Q  21 agatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttcgtcatgatatatgag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337285 agatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttcgtcatgatatatgag 4337186  T
Q  121 ataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcctcc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4337185 ataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgccactcc 4337086  T
Q  221 tca 223  Q
    |||    
T  4337085 tca 4337083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 4319205 - 4319416
Alignment:
Q  21 agatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttcg---------tcatg 111  Q
    |||||||| |||||||||||||||||| ||||||  | ||||| |||||||||| |||||||| |||||||||||| ||| |||||         ||||     
T  4319205 agatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacattgctccaatatttcgacgactggttcatc 4319304  T
Q  112 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 211  Q
    ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||||||||||||||||||| ||| ||||||    
T  4319305 atatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgttacaactctc 4319404  T
Q  212 tgctcctcctca 223  Q
    |||  |||||||    
T  4319405 tgccactcctca 4319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 4122642 - 4122747
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4122642 tcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgatacca 4122741  T
Q  207 ctctct 212  Q
    ||||||    
T  4122742 ctctct 4122747  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 4132616 - 4132729
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  207 ctctctgctcctcctca 223  Q
    ||||||||  |||||||    
T  4132713 ctctctgccactcctca 4132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 4346660 - 4346553
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| ||||||||||||||||| |||| ||    
T  4346660 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtcaccaggttccatattcgatatca 4346561  T
Q  207 ctctctgc 214  Q
     |||||||    
T  4346560 ttctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  207 ctctctgc 214  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 4132540 - 4132572
Alignment:
Q  25 cctcttggcagcacattcatttttatcaccact 57  Q
    ||||||||||||||||||||||| |||||||||    
T  4132540 cctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 5065447 - 5065563
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  207 ctctctgctcctcctca 223  Q
    |||||||| ||||||||    
T  5065547 ctctctgcccctcctca 5065563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 5253825 - 5253715
Alignment:
Q  112 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 211  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  |||||||| ||| || |||  |||||     
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctt 5253726  T
Q  212 tgctcctcctc 222  Q
    ||| |||||||    
T  5253725 tgcccctcctc 5253715  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 5126627 - 5126743
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  207 ctctctgctcctcctca 223  Q
    |||||| | ||||||||    
T  5126727 ctctctccccctcctca 5126743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  207 ctctctg 213  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  207 ctctctg 213  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 5346326 - 5346210
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  207 ctctctgctcctcctca 223  Q
    |||||||  ||||||||    
T  5346226 ctctctggccctcctca 5346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  207 ctctctg 213  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 36212919 - 36213035
Alignment:
Q  107 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 206  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  207 ctctctgctcctcctca 223  Q
     ||||||| ||||||||    
T  36213019 atctctgcccctcctca 36213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 47985403 - 47985507
Alignment:
Q  119 agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcct 218  Q
    |||||||||| | ||||| |||||||  |||  ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| | |||    
T  47985403 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct 47985502  T
Q  219 cctca 223  Q
    |||||    
T  47985503 cctca 47985507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 48003977 - 48004081
Alignment:
Q  119 agataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctctgctcct 218  Q
    |||||||||| | ||||| |||||||  |||  ||| ||||||||||||| | ||| ||||| | ||| ||||| ||| ||||||| ||||||| | |||    
T  48003977 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccct 48004076  T
Q  219 cctca 223  Q
    |||||    
T  48004077 cctca 48004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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