View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3121_low_47 (Length: 201)
Name: NF3121_low_47
Description: NF3121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3121_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 9e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 8755516 - 8755672
Alignment:
| Q |
29 |
ggaccctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcgatatacccatggataggcg |
128 |
Q |
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| T |
8755516 |
ggaccctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatctcctcaatatacccatcaataggcg |
8755615 |
T |
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| Q |
129 |
gcgtaagcgttgccataaacatattcatcggaaaaggcgtcaaatccggcaccaaag |
185 |
Q |
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| T |
8755616 |
gcgtaagcgttgccataaacatattcatcggaaacggcgtcaaatccggcaccaaag |
8755672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 10507012 - 10506864
Alignment:
| Q |
37 |
aaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcgatatacccatggataggcggcgtaagc |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
10507012 |
aaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcaatatacccatcaataggcggtgtaagc |
10506913 |
T |
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| Q |
137 |
gttgccataaacatattcatcggaaaaggcgtcaaatccggcaccaaag |
185 |
Q |
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| T |
10506912 |
gtcgccataaacctattcaccggaaatggagtcaaatccggcaccaaag |
10506864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 10509935 - 10509890
Alignment:
| Q |
31 |
accctgaaaatcaacactaccaatctacctaatcttctccttccca |
76 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10509935 |
accctcaaaatcaacactaccaatctacctaatcttctccttccca |
10509890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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