View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_12 (Length: 348)
Name: NF3123_high_12
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 8755742 - 8756076
Alignment:
| Q |
1 |
ccgcttgtctcgccctatgcttcctcatcaaaaccctactatactccttcgccaatttcatcccatcttccttggtcaattcatactttggcaatttctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8755742 |
ccgcttgtctcgccctatgcttcctcatcaaaaccctactatactccttggccaatttcatcccatcttccttcgtcaattcatactttggcaatttctc |
8755841 |
T |
|
| Q |
101 |
agcatccactaaccctaatgttatataatccaacccaggggttcccattatcgttggtttctcagaaaccctaaatttggcgtttttcttcttcatcata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8755842 |
agcatccactaaccctaatgttatataatccaacccaggggttcccattatcgttggtttctcaaaaaccctaaatttggcgtttttcttcttcatcata |
8755941 |
T |
|
| Q |
201 |
tcaagttcaatttgacgatctttgctaattaaccccaattttcctcgttcagcttcgcgtgcacgttgtttgggtttgagaaaacgaagcggtgttggtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8755942 |
tcaagttcaatttgacgatctttgctaattaaccctaatttttctcgttcagcttcgcgtgcacgttgtttgggtttgagaaaacgaagtggtgttggtg |
8756041 |
T |
|
| Q |
301 |
cgttgaggcattgatcgtagaggcgttcgcgttct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
8756042 |
cgttgaggcattgatcgtagaggcgttcgcgttct |
8756076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 10506794 - 10506460
Alignment:
| Q |
1 |
ccgcttgtctcgccctatgcttcctcatcaaaaccctactatactccttcgccaatttcatcccatcttccttggtcaattcatactttggcaatttctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
10506794 |
ccgcttgtctcgccctatgcttcctcatcaaaaccctactatactccttggccaatttcatcccatcttccttggtcaattcatacttgggcaatttctc |
10506695 |
T |
|
| Q |
101 |
agcatccactaaccctaatgttatataatccaacccaggggttcccattatcgttggtttctcagaaaccctaaatttggcgtttttcttcttcatcata |
200 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10506694 |
agcatcaactaaccctaacgttatataatctaacccaggtgttcccattatcgttggcttctcagaaaccctaaatttggcgtttttcttcttcatcata |
10506595 |
T |
|
| Q |
201 |
tcaagttcaatttgacgatctttgctaattaaccccaattttcctcgttcagcttcgcgtgcacgttgtttgggtttgagaaaacgaagcggtgttggtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10506594 |
tcaagttcaatttgacgatctttgctaattaaccctaattttcctcgttcagcttcgcgtgcacgttgtttgggtttgagaaaacgaagtggtgttggtg |
10506495 |
T |
|
| Q |
301 |
cgttgaggcattgatcgtagaggcgttcgcgttct |
335 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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|
| T |
10506494 |
cgttgaggcattgttcgtagaggcgttcgcgttct |
10506460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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