View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3123_high_15 (Length: 313)

Name: NF3123_high_15
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3123_high_15
NF3123_high_15
[»] chr7 (1 HSPs)
chr7 (18-306)||(35312016-35312299)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 35312299 - 35312016
Alignment:
Q  18 ttatgatttcaaagactacagatttgacatttgaattgtcttttcataatctctctctttctc------acacttctctgcagactgaatacacggttgg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      |||||||||||||||||||||||||||||||    
T  35312299 ttatgatttcaaagactacagatttgacatttgaattgtcttttcataatctctctctctctctctctcacacttctctgcagactgaatacacggttgg 35312200  T
Q  112 aactgcatttcaaattttagcagcttttacttttgcatttcatacgtactactactacttcattactacgtgattcatcaagtatttttacctagcacac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||    
T  35312199 aactgcatttcaaattttagcagcttttacttttgcatttcatacgtactactactactt-----------gattcatcaagtatttttacctagcacac 35312111  T
Q  212 acatactactcataaagatttttggacttttctacacttatacgaattttgtactagtctatagtatacgtttaattcaatccagtttcatttca 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35312110 acatactactcataaagatttttggacttttctacacttatacgaattttgtactagtctatagtatacgtttaattcaatccagtttcatttca 35312016  T

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