View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3123_high_20 (Length: 284)
Name: NF3123_high_20
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 33306453 - 33306711
Alignment:
| Q |
9 |
atggagattcaatcctgtctttttatgaatcccctacagcagtcagctgcatggtgcaacaactctatggtgtggcaaccgtgggaatcgttaaatctag |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33306453 |
atggagattcaatcctatctttttatgaatcccctacagcagtcagctgcatggtgcaacaactccatggtgtggcaaccgtgggaatcgttaaatctag |
33306552 |
T |
|
| Q |
109 |
tgagtgaaaaattctctatctaaatctaaattcaacatttttatgaagcataacaaccaacaacagtgtttgcaagagaattcacaaaaaggtaaaacat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33306553 |
tgagtgaaaaattctctatctaaatctaaattcaacatttttatgaagcataacaaccaacaacagtgtttgcaagagaattcacaaaaaggtaaaacat |
33306652 |
T |
|
| Q |
209 |
accaacatagtcagagaatttttcaatcttttctaaacgaccagattgttttttatcta |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33306653 |
accaacatagtcagagaatttttcaatcttttctaaacgaccagattgttttttatcta |
33306711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 33253455 - 33253505
Alignment:
| Q |
205 |
acataccaacatagtcagagaatttttcaatcttttctaaacgaccagatt |
255 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
33253455 |
acataccaacatagtgggagaacttttctatcttttccaaacgaccagatt |
33253505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 33273627 - 33273677
Alignment:
| Q |
205 |
acataccaacatagtcagagaatttttcaatcttttctaaacgaccagatt |
255 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
33273627 |
acataccaacatagtgggagaacttttctatcttttccaaacgaccagatt |
33273677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University