View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3123_high_21 (Length: 282)

Name: NF3123_high_21
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3123_high_21
NF3123_high_21
[»] chr3 (5 HSPs)
chr3 (11-264)||(29074251-29074504)
chr3 (11-264)||(48099599-48099851)
chr3 (139-246)||(34013575-34013682)
chr3 (186-264)||(4185971-4186049)
chr3 (194-264)||(20620299-20620369)
[»] scaffold0655 (1 HSPs)
scaffold0655 (11-264)||(5851-6103)
[»] chr2 (2 HSPs)
chr2 (11-251)||(1586399-1586638)
chr2 (11-167)||(40620867-40621022)
[»] scaffold0134 (1 HSPs)
scaffold0134 (11-264)||(40632-40884)
[»] chr1 (8 HSPs)
chr1 (11-264)||(24209828-24210080)
chr1 (11-264)||(45029605-45029857)
chr1 (16-264)||(45034456-45034703)
chr1 (11-264)||(19329839-19330090)
chr1 (11-264)||(9932317-9932569)
chr1 (178-264)||(44387196-44387282)
chr1 (100-264)||(7324530-7324694)
chr1 (11-51)||(44387408-44387448)
[»] chr6 (2 HSPs)
chr6 (11-264)||(33165844-33166096)
chr6 (19-264)||(16594481-16594725)
[»] chr8 (3 HSPs)
chr8 (19-264)||(40270581-40270825)
chr8 (98-261)||(31342890-31343053)
chr8 (100-264)||(23583845-23584009)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-264)||(31714-31958)
[»] chr5 (1 HSPs)
chr5 (19-264)||(1546095-1546339)
[»] chr4 (1 HSPs)
chr4 (186-263)||(19337035-19337112)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 29074251 - 29074504
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29074251 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaatagggaaataaagttctagtaaaaatattatgaatccaacatgact 29074350  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29074351 caaatacaacattaacaacatctctattttcggcttcaacactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 29074450  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29074451 aaaaacacagtacccagatgtggaacgtctggtgtcaggacattcaccccaatc 29074504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 48099599 - 48099851
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||| ||| |||||||||| |||||||||||||||||  | ||||  | |||||||| |||||| |  | ||   ||| ||| |||||| || |    
T  48099599 cagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtgggaaatgaagttccaagagaagg-ttacgaagccaacaagatt 48099697  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    ||||||| |||||| ||||| | || |  || ||||| |||||||| || || || ||||| ||    |||||| |||| ||||||||||||||||||||    
T  48099698 cagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgggttgtcgcttggaagaccaggagatgaggttgtcaccaag 48099797  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||    
T  48099798 aaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatc 48099851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 34013682 - 34013575
Alignment:
Q  139 ttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgt 238  Q
    ||||||||| |||||||| || || |  |||||||||  ||| ||  ||||||| || ||||| || |||||||| |||||||||||||| ||||| |||    
T  34013682 ttcggcttcggcactagatcgggataaggtgggctgccgtttagatgaccaagatatcaggttatctccaagaaagacacagtatccagaagtagaccgt 34013583  T
Q  239 ctggtgtc 246  Q
    ||||||||    
T  34013582 ctggtgtc 34013575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 4185971 - 4186049
Alignment:
Q  186 accaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||||||| || ||||| || |||||||| | |||||| ||||| ||||||||||||||||| || ||  ||||||||||    
T  4185971 accaagatatcaggttatctccaagaaagatacagtagccagaagtagaacgtctggtgtcggggcacccaccccaatc 4186049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 20620369 - 20620299
Alignment:
Q  194 atgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||||||||||||||||||| ||||| || ||||| || ||||  |  |||||||||||| ||||||||||    
T  20620369 atgaggttgtcaccaagaaacacacaatagccagaggtcgaacaacgagtgtcaggacatccaccccaatc 20620299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 5851 - 6103
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||| |||||||   |||  ||||||||||||||    
T  5851 cagagagatagatgacactaacattgtcacaatacaccaaagtggcttgaggaatagggaaatgaagttccagtaaaagg-ttacaaatccaacatgact 5949  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  5950 cagatacaacattagcaacacctctatattcggcttcaacactagaccgagagagagtgggctgccttttggaagaccaagagataaggttgtcaccaag 6049  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||||||||| || | || ||| ||| ||||||||||| ||||| ||||||||||    
T  6050 aaaaacacaataccgagctgtggaatgtctggtgtcaagacatccaccccaatc 6103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 1586399 - 1586638
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||  |||| |||||||||| ||||    
T  1586399 cagagagatagatgacactaacattgtcacaatacaccaaagtgccatgaggaatagggaaatgaagttccagtaaaag-attacgaatccaacaagact 1586497  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    || ||||||||||| ||||| |||||| ||| ||||||||||||||| |||||||||| || ||| |||||||| |||||||||| ||||||||||||||    
T  1586498 catatacaacattagcaacacctctatattcagcttcagcactagactgagagagagtaggttgccttttggaagaccaagagataaggttgtcaccaag 1586597  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggac 251  Q
    ||||||||||||  ||||||| |||||||| ||||||||||    
T  1586598 aaaaacacagtactcagatgtggaacgtctagtgtcaggac 1586638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 40621022 - 40620867
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| || ||||||||||||||||||||||||||||| ||  | || ||||| || |||| ||| || ||| ||||  ||| ||| |||| ||||||    
T  40621022 cagagagataaatgacactaacattgtcacaatacaccaacgtatcctggggaatgggaaaatgaagctccagt-aaaaggttacgaagccaatatgact 40620924  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagag 167  Q
    || ||||||||||| |||   || ||| |||||||||| ||||||| ||||||||||    
T  40620923 caaatacaacattagcaaggcctttatattcggcttcaacactagaacgagagagag 40620867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 40884 - 40632
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    ||||||| || ||| ||||||||||||||||||||||||||||| | |||||||| || |||| ||| || | |||||   ||| |||||||||||||||    
T  40884 cagagagataaatggcactaacattgtcacaatacaccaaagtggcctgaggaataggaaaatgaagctccaataaaagg-ttacgaatccaacatgact 40786  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||||||||||||| ||||| |||||| ||||||||||||||| ||  ||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  40785 cagatacaacattagcaacacctctatattcggcttcagcactggagtgagagagagtgggctgccttttggaagaccaagagataaggttgtcaccaag 40686  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||||||||||| |||||||||||||||| ||| |||||||||  |||||||||    
T  40685 aaaaacacagtacccagatgtagaacgtcgggtatcaggacatctaccccaatc 40632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 24210080 - 24209828
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || || ||||| |  |||| ||| |||||||||||    
T  24210080 cagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagag-attacgaagccaacatgact 24209982  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||    
T  24209981 cagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgag 24209882  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||| |||||||||||||| || ||||||| ||||||||||||| ||||||||||    
T  24209881 aaagacacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatc 24209828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 45029857 - 45029605
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || || ||||| |  |||| ||| |||||||||||    
T  45029857 cagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagag-attacgaagccaacatgact 45029759  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||    
T  45029758 cagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgag 45029659  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||| |||||||||||||| || ||||||| ||||||||||||| ||||||||||    
T  45029658 aaagacacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatc 45029605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 45034703 - 45034456
Alignment:
Q  16 aggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagat 115  Q
    ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || || ||||| |  |||| ||| |||||||||||||||     
T  45034703 aggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagag-attacgaagccaacatgactcagac 45034605  T
Q  116 acaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaa 215  Q
    ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||||| |    
T  45034604 acaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgagaaaga 45034505  T
Q  216 cacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||||||||||||| || ||||||| ||||||||||||| ||||||||||    
T  45034504 cacagtatccagaagtggaacgtcgggtgtcaggacatccaccccaatc 45034456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 19330090 - 19329839
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||  ||||||||||||||||||| |||  |||||| |||||||| || || | ||| || | || || |||| |||||||||||||| |    
T  19330090 cagataggtagatagcactaacattgtcacaatataccggagtgacttgaggaatgggaaagtgaagctccaatagaa-tattgtgaatccaacatgatt 19329992  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    | || ||||  ||  ||||| | |||| ||| | |||||||||||| ||||| ||||| |||| | |||||||| |||||||||| ||||||| ||| ||    
T  19329991 cggagacaaagtttgcaacacccctatattcagtttcagcactagaacgagaaagagt-ggcttccttttggaagaccaagagataaggttgttaccgag 19329893  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||||| ||| ||  ||||||| || ||||  ||||| |||||| ||||||||||    
T  19329892 aaaaagacaatactcagatgttgagcgtcgagtgtcgggacatccaccccaatc 19329839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 9932317 - 9932569
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||| ||| |||||||||| |||||||||||||||||  | ||||  | |||||||| |||||| |  | ||   ||| ||| |||||| || |    
T  9932317 cagaaaggtaaatggcactaacattatcacaatacaccaaagtagcttgagagagtgggaaatgaagttccaagagaagg-ttacgaagccaacaagatt 9932415  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    ||||||| |||||| ||||| | || |  || ||||| |||||||| || || || ||||| ||    |||||| |||| ||||||||||||||||||||    
T  9932416 cagataccacattagcaacacccctgtactcagcttctgcactagagcgcgaaagtgtgggttgtcgcttggaagaccaggagatgaggttgtcaccaag 9932515  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||    
T  9932516 aaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatc 9932569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 44387282 - 44387196
Alignment:
Q  178 tttggaaaaccaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||||||| ||||||| |||||||||||||||||||| ||||| || ||||  || ||||| | ||||||||||||| ||||||||||    
T  44387282 tttggaagaccaagaaatgaggttgtcaccaagaaacacacaatagccagcggtcgaacgacgggtgtcaggacatccaccccaatc 44387196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 7324530 - 7324694
Alignment:
Q  100 ccaacatgactcagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgagg 199  Q
    |||||| ||||||||||| |||||  ||||| |||  | |||||||||||||||||| ||||| |  ||||| ||   ||||||| |||| ||||  ||     
T  7324530 ccaacaagactcagatacgacattggcaacacctcggtattcggcttcagcactagagcgagataatgtgggttggcgtttggaagaccatgagagtaga 7324629  T
Q  200 ttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||||||||||||| ||||| || ||||| ||||| |  ||||| || |||||| | ||||||||    
T  7324630 ttgtcaccaagaaatacacaataaccagacgtagatctcctggtatctggacatccgccccaatc 7324694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 44387448 - 44387408
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaa 51  Q
    |||| ||||||||| |||||||||| |||||||||||||||    
T  44387448 cagaaaggtagatggcactaacattatcacaatacaccaaa 44387408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 33166096 - 33165844
Alignment:
Q  11 cagagaggtagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgact 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  | |||||||| || || |  || ||  |||| |  |||| ||| |||||||||||    
T  33166096 cagataggtagatggcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctcctgtaagag-attacgaagccaacatgact 33165998  T
Q  111 cagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaag 210  Q
    |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||  | |||||  |||||| ||||||||||||||| ||    
T  33165997 cagacacaacattagcaacacctctatattccgcttcagcactagaccgagagagagtgggttgtctcttggaggaccaagcgatgaggttgtcaccgag 33165898  T
Q  211 aaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||| |||||||||||||| || ||||||| ||||||||||||| ||||||||||    
T  33165897 aaagacacagtatccagaagtggaacgtcaggtgtcaggacatccaccccaatc 33165844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 16594725 - 16594481
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| ||||||||||||||||||||||||||||| | | |||||| || ||||  |||||||| | ||  |||  |||||||||| || || || |||    
T  16594725 tagatggcactaacattgtcacaatacaccaaagtggcctcaggaataggaaaatggagttctaggagaag-attgcgaatccaacacgattcggaaaca 16594627  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||  | |||| |||||||||||||||||| || |||||||| || ||| |||||||| ||||||| || ||||||||||| ||||||||||    
T  16594626 acatttgcaactcccctatattcggcttcagcactagaacgggagagagtaggttgccttttggaagaccaagaaataaggttgtcacctagaaaaacac 16594527  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||||||    
T  16594526 agtaaccagatgtagaccgtctagtgtcaggacatccaccccaatc 16594481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 40270581 - 40270825
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| |||||||||||||| |||||||||||||| | ||| |||| || ||||  ||||| || || || |||  |||||||||| || ||||| |||    
T  40270581 tagatggcactaacattgtcataatacaccaaagtggcctgatgaataggaaaatggagttccag-aagaagattgcgaatccaacacgattcagagaca 40270679  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||| |||||| ||| |||||||||||||| || |||||||| ||||||  ||||||| ||||||| || ||||||||||| ||||||||||    
T  40270680 acatttgcaacacctctatattcagcttcagcactagaacgggagagagttggctgccgtttggaagaccaagaaataaggttgtcacctagaaaaacac 40270779  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    | || |||||||||||||||||||||||||||||| ||||||||||    
T  40270780 aataaccagatgtagaacgtctggtgtcaggacatccaccccaatc 40270825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 31343053 - 31342890
Alignment:
Q  98 atccaacatgactcagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatga 197  Q
    ||||||||| | ||||| |||||||| ||||||  ||||| ||| |||||| ||||||| ||||||||| | |||||| |||| ||| |||||||||| |    
T  31343053 atccaacataattcagacacaacattcacaacacttctatattcagcttcaacactagaacgagagagaataggctgcctttttgaagaccaagagataa 31342954  T
Q  198 ggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcacccca 261  Q
    | ||||| |  |||||||||||||| || ||||| || ||||| ||| || ||||| |||||||    
T  31342953 gattgtcgctgagaaaaacacagtacccggatgtggagcgtctagtgacatgacatccacccca 31342890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 23584009 - 23583845
Alignment:
Q  100 ccaacatgactcagatacaacattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgagg 199  Q
    |||||| || |||||||| |||||| ||||| | || |  || ||||  |||||||||||||| || ||||| ||  | |||||| |||| || ||||||    
T  23584009 ccaacaagattcagataccacattagcaacacccctgtactcagcttttgcactagaccgagaaagtgtgggttgtctcttggaagaccaggaaatgagg 23583910  T
Q  200 ttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    || ||||||||||| ||||| || ||||| |||||||| | ||||||||||||| ||||| ||||    
T  23583909 ttatcaccaagaaatacacaatagccagaagtagaacgacgggtgtcaggacatccacccgaatc 23583845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 31958 - 31714
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| ||||||||||||||||||||||||||||  | |||||||| || ||||  ||||| || || || |||  ||||| |||| || ||||| | |    
T  31958 tagatggcactaacattgtcacaatacaccaaagttgcctgaggaataggaaaatggagttccag-aagaagattgcgaatctaacacgattcagagata 31860  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||| ||| || ||| ||||||||||||||  | |||||||| |||||| |||||||| ||||||| || ||||||||||| ||||||||||    
T  31859 acatttgcaacacctcgatattcagcttcagcactagaatgggagagagttggctgccttttggaagaccaagaaataaggttgtcacctagaaaaacac 31760  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  31759 agtatacagatgtagaacgtctggtgtcaggacatccaccccaatc 31714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 1546095 - 1546339
Alignment:
Q  19 tagatgacactaacattgtcacaatacaccaaagtgacatgaggaattgggaaataaagttctagtaaaaatattatgaatccaacatgactcagataca 118  Q
    |||||| ||||||||||||||||||| |||| |||| |||||||||| || |||| ||  || || || ||  ||  || |||| || || ||||| |||    
T  1546095 tagatggcactaacattgtcacaatataccagagtggcatgaggaatgggaaaatgaaactccag-aagaaggttgcgagtccagcaggattcagagaca 1546193  T
Q  119 acattaacaacatctctattttcggcttcagcactagaccgagagagagtgggctgcattttggaaaaccaagagatgaggttgtcaccaagaaaaacac 218  Q
    |||||  ||||| |||||| ||| |||||||||||||| ||||| ||||| | |||| |||||||| |||||||||| || |||||| | ||||||||||    
T  1546194 acattcgcaacacctctatattcagcttcagcactagaacgagaaagagtagactgccttttggaagaccaagagataagattgtcatcgagaaaaacac 1546293  T
Q  219 agtatccagatgtagaacgtctggtgtcaggacattcaccccaatc 264  Q
    |||| |||||||| || ||||| |||||||||||| ||||||||||    
T  1546294 agtacccagatgtggagcgtctagtgtcaggacatccaccccaatc 1546339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 19337035 - 19337112
Alignment:
Q  186 accaagagatgaggttgtcaccaagaaaaacacagtatccagatgtagaacgtctggtgtcaggacattcaccccaat 263  Q
    ||||||| || ||||| || |||||||| |||||||| ||||| ||||| ||||||||||| || ||  |||||||||    
T  19337035 accaagatatcaggttatctccaagaaagacacagtagccagaagtagaccgtctggtgtcggggcacccaccccaat 19337112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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