View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3123_high_31 (Length: 237)
Name: NF3123_high_31
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29394408 - 29394627
Alignment:
| Q |
1 |
catccgaaagttgtttatttctagctttggaataaaatttgtggttcatagagacgatttaaagatcaaatttaaaggatcgccgatgtaattttgaccg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29394408 |
catccgaaagttgtttatttctagttttggaataaaatttgtggttcatataaacgatttaaagatcaaatttaaaggaccgccgatgtaattttgaccg |
29394507 |
T |
|
| Q |
101 |
gaataaagtagggtagcaagctgtgaagaaagggacacaatcatacgacacatggccattgacataaatgaaattacaaaatcattaactaagacacacc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29394508 |
gaataaa-tagggtagcaagctgtgaagaaagggacacaatcatacgacacatggccattcacataaatgaaattacaaaatcattaactaagacacacc |
29394606 |
T |
|
| Q |
201 |
ttccaaattgaataaggtatg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29394607 |
ttccaaattgaataaggtatg |
29394627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University