View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_32 (Length: 237)
Name: NF3123_high_32
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 6352823 - 6353033
Alignment:
| Q |
12 |
taacaaagttaaactattcaatttaccgagagttttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatg |
111 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352823 |
taacaaagttaaactattagctttaccgaaagttttttgatgatgtgtgggttcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatg |
6352922 |
T |
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| Q |
112 |
cagaatggtccactgtatatagtnnnnnnnnttcaaaagatccattagcttcctatatatgattttgtatacaacatattattgctaggactaggtatta |
211 |
Q |
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|||||||||||||||| ||| | ||||||||||||||||| || || |||||||||||||||| || |||||| ||| |||||||||||||| |
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| T |
6352923 |
cagaatggtccactgttcatattaagaaattttcaaaagatccattagatttctttatatgattttgtata-aatatattactgcaaggactaggtatta |
6353021 |
T |
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| Q |
212 |
tgactaatatat |
223 |
Q |
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||| |||||||| |
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| T |
6353022 |
tgattaatatat |
6353033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 6363628 - 6363743
Alignment:
| Q |
12 |
taacaaagttaaactattcaatttaccgagagttttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatg |
111 |
Q |
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|||||| ||||||| ||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6363628 |
taacaatgttaaaccattaactttaccaagagtttttttatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtcatccatg |
6363727 |
T |
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| Q |
112 |
cagaatggtccactgt |
127 |
Q |
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||||||| || ||||| |
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| T |
6363728 |
cagaatgatcgactgt |
6363743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 6424519 - 6424625
Alignment:
| Q |
12 |
taacaaagttaaactattcaatttaccgagagttttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatg |
111 |
Q |
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|||||| | ||||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |
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| T |
6424519 |
taacaatgctaaactattaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacg |
6424618 |
T |
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| Q |
112 |
cagaatg |
118 |
Q |
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||||||| |
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| T |
6424619 |
cagaatg |
6424625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 6391469 - 6391539
Alignment:
| Q |
44 |
ttttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatgcag |
114 |
Q |
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||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6391469 |
ttttttgatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag |
6391539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 7459642 - 7459715
Alignment:
| Q |
42 |
agttttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatgcaga |
115 |
Q |
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| T |
7459642 |
agttttttgatgatatgaggattcaccccagcaatcatctgccttgcgaattcctcatcagtcatccatgcaga |
7459715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 6332470 - 6332539
Alignment:
| Q |
46 |
ttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatgcaga |
115 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
6332470 |
ttttgattatgtgtggattcacaccagcaatcatctcccttgcaaattctccatcagtcatccatgcaga |
6332539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 6321904 - 6321954
Alignment:
| Q |
54 |
atgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtc |
104 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
6321904 |
atgtgtggattcacaccagcaatcatctcccttgcaaattcttcatcagtc |
6321954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 6289514 - 6289572
Alignment:
| Q |
46 |
ttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtc |
104 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| |||| |||||| ||||||||| |
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| T |
6289514 |
ttttgataatgtgtggattcacaccagcaatcatctctcttgtaaattcttcatcagtc |
6289572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 6275027 - 6275085
Alignment:
| Q |
46 |
ttttgatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtc |
104 |
Q |
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||||||||||||||||||| || |||||||||||||| |||| |||||| || |||||| |
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| T |
6275027 |
ttttgatgatgtgtggatttacaccagcaatcatctctcttgtaaattcttcgtcagtc |
6275085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 6410646 - 6410701
Alignment:
| Q |
59 |
tggattcaccccagcaatcatctcccttgcaaattcctcatcagtctgccatgcag |
114 |
Q |
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||||||||| |||||||| ||||| ||||| ||||||||||||||| |||||||| |
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| T |
6410646 |
tggattcacaccagcaattatctctcttgcgaattcctcatcagtcatccatgcag |
6410701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 6370575 - 6370617
Alignment:
| Q |
60 |
ggattcaccccagcaatcatctcccttgcaaattcctcatcag |
102 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
6370575 |
ggattcacaccagcaatcatctgtcttgcaaattcctcatcag |
6370617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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