View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3123_high_34 (Length: 233)

Name: NF3123_high_34
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3123_high_34
NF3123_high_34
[»] chr1 (5 HSPs)
chr1 (43-109)||(52742811-52742877)
chr1 (43-109)||(27689502-27689568)
chr1 (43-109)||(30551424-30551490)
chr1 (43-109)||(37624405-37624471)
chr1 (68-106)||(23081964-23082002)
[»] chr8 (5 HSPs)
chr8 (43-109)||(41522556-41522622)
chr8 (44-94)||(117263-117313)
chr8 (43-109)||(7486292-7486358)
chr8 (43-109)||(13363413-13363479)
chr8 (43-109)||(36756279-36756346)
[»] chr4 (5 HSPs)
chr4 (43-109)||(11094739-11094805)
chr4 (43-105)||(29687817-29687879)
chr4 (43-109)||(52980199-52980265)
chr4 (51-109)||(35788019-35788077)
chr4 (43-109)||(39592125-39592190)
[»] chr3 (4 HSPs)
chr3 (43-109)||(8371435-8371501)
chr3 (43-109)||(53808533-53808599)
chr3 (43-109)||(34902829-34902895)
chr3 (43-108)||(47765654-47765719)
[»] chr2 (1 HSPs)
chr2 (43-109)||(21010333-21010399)
[»] scaffold0025 (1 HSPs)
scaffold0025 (70-109)||(56533-56572)
[»] chr7 (1 HSPs)
chr7 (66-109)||(4167689-4167732)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 52742877 - 52742811
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  52742877 aaaagagaattgttggatcacaaaggatctattgtattttactgtaaaccactgacacctaatattt 52742811  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 27689502 - 27689568
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||| |||||||||||||   |||||||||||||||||| ||| ||||||| |||||||||||||    
T  27689502 aaaagataattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaatattt 27689568  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 30551490 - 30551424
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| ||||||||||||   |||||||||||||||||| ||| ||||||| |||||||||||||    
T  30551490 aaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaatattt 30551424  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 37624471 - 37624405
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| ||||||| ||||   |||||||||||||||||| ||| ||||||| |||||||||||||    
T  37624471 aaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaatattt 37624405  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 23082002 - 23081964
Alignment:
Q  68 ggtctattgtattttattgtaaaccacttacacctaata 106  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  23082002 ggtctattgtattttagtgtaaaccactaacacctaata 23081964  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 41522622 - 41522556
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||||| ||||||||| |   |||||||||||||||||||||||||||||  |||||||||||||    
T  41522622 aaaagagatttgttggatgatgtagggtctattgtattttattgtaaaccaccaacacctaatattt 41522556  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 117263 - 117313
Alignment:
Q  44 aaagagaattgttggatcacaaagggtctattgtattttattgtaaaccac 94  Q
    |||||| |||||||||||| | ||| |||||||||||||||||||||||||    
T  117263 aaagaggattgttggatcatataggatctattgtattttattgtaaaccac 117313  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 7486292 - 7486358
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| |||||| ||||| | | | |||||||||||||||||||||||||  |||||||||||||    
T  7486292 aaaagaggattgttagatcatataagatctattgtattttattgtaaaccaccaacacctaatattt 7486358  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 13363479 - 13363413
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| ||||||||||||   |||||||||||||||||  ||| ||||||| |||||||||||||    
T  13363479 aaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaatattt 13363413  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 36756279 - 36756346
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtcta-ttgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||||||| |||||||||   |||||||| |||||||||| ||| ||||||| |||||||||||||    
T  36756279 aaaagagaatcgttggatcatgtagggtctaattgtattttactgtgaaccactaacacctaatattt 36756346  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 11094739 - 11094805
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| ||||||||||||   | |||||||||||||||||||||||||||  |||||||||||||    
T  11094739 aaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaatattt 11094805  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 29687879 - 29687817
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaat 105  Q
    ||||||||||||||||||||   | |||||||||||||||||||| |||||||  ||||||||    
T  29687879 aaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaat 29687817  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 52980199 - 52980265
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| |||||||||| |   || ||||||||||||||||||||||||||  |||||||||||||    
T  52980199 aaaagaggattgttggattatgtagagtctattgtattttattgtaaaccaccaacacctaatattt 52980265  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35788019 - 35788077
Alignment:
Q  51 attgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||||||||   ||||||||||| ||||||||||||| |||  |||||||||||||    
T  35788019 attgttggatcatgcagggtctattgcattttattgtaaatcaccaacacctaatattt 35788077  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 39592190 - 39592125
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| ||||||||||||   ||| |||||| ||||||||||||||||||  |||||||||||||    
T  39592190 aaaagaggattgttggatcatgtagg-tctattatattttattgtaaaccaccaacacctaatattt 39592125  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 8371435 - 8371501
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| |||||||||||| | |  |||||||||||| |||||||||||||| |||||||||||||    
T  8371435 aaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaatattt 8371501  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 53808533 - 53808599
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||||||| |||||||||   ||| |||||||||||||| ||| ||||||| |||||||||||||    
T  53808533 aaaagagaatcgttggatcatgtaggatctattgtattttactgtgaaccactaacacctaatattt 53808599  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 34902895 - 34902829
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| ||||||||||||   ||||| |||||| ||||| ||| ||||||| |||||||||||||    
T  34902895 aaaagaggattgttggatcatgtagggtttattgttttttagtgtgaaccactaacacctaatattt 34902829  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 47765654 - 47765719
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatatt 108  Q
    ||||||| ||||||||||||   ||||||||||||||||||  || ||||||| |||| |||||||    
T  47765654 aaaagaggattgttggatcatgtagggtctattgtattttagcgtgaaccactaacacttaatatt 47765719  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 21010399 - 21010333
Alignment:
Q  43 aaaagagaattgttggatcacaaagggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||| |||||||||||||   |||||||||||||||||||| | ||||||| |||||||||||||    
T  21010399 aaaagataattgttggatcaggtagggtctattgtattttattatgaaccactaacacctaatattt 21010333  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 56572 - 56533
Alignment:
Q  70 tctattgtattttattgtaaaccacttacacctaatattt 109  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  56572 tctattgtattttattgtaaaccaccaacacctaatattt 56533  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 4167689 - 4167732
Alignment:
Q  66 agggtctattgtattttattgtaaaccacttacacctaatattt 109  Q
    ||||||| |||||||||||||||||||||  |||||||||||||    
T  4167689 agggtctgttgtattttattgtaaaccaccgacacctaatattt 4167732  T

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