View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_35 (Length: 224)
Name: NF3123_high_35
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 25966390 - 25966586
Alignment:
| Q |
18 |
cttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccagatagtaaaacaccgaacggcacatcagtcatcaacct |
117 |
Q |
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| T |
25966390 |
cttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccagatagtaaaacaccgaacggcacatcagtcatcaacct |
25966489 |
T |
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| Q |
118 |
ttttatcacagcctgtaatcaaacacataaatcgtattaattttacttagtctaactcaaccttacagaaccgacttaaaaatgtgagaattatcta |
214 |
Q |
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| T |
25966490 |
ttttatcacagcctgtaatcaaacacataaatcgtattaattttactgagtctaactcaaccttacaaaaccgacttaaaaatgtgagaattgtcta |
25966586 |
T |
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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 30273461 - 30273547
Alignment:
| Q |
52 |
tgcaaccaatgaagaatccaaacctccagatagtaaaacaccgaacggcacatcagtcatcaacctttttatcacagcctgtaatca |
138 |
Q |
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| T |
30273461 |
tgcaaccaatgatgagtccaaacctccagatagtagaacaccaaaaggcacatcagtcatcaacctctttatcactgcctgtaatca |
30273547 |
T |
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