View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_36 (Length: 223)
Name: NF3123_high_36
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4474281 - 4474059
Alignment:
| Q |
1 |
ttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgctaggga |
100 |
Q |
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| T |
4474281 |
ttcaattcgttcgggaaacgatacattgtcacggctagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgctaggga |
4474182 |
T |
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| Q |
101 |
ctgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagaggcagttatgaaagaatt |
200 |
Q |
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| T |
4474181 |
ctgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagaggcagttatgaaagaatt |
4474082 |
T |
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| Q |
201 |
tggaagtgacaatttgcctgatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4474081 |
tggaagtgacaatttgcctgatt |
4474059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 24571572 - 24571391
Alignment:
| Q |
1 |
ttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgctaggga |
100 |
Q |
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|||||||| || ||||| || ||| ||||||| || ||||||||||||||||| |||||||||||||||| || ||||||| ||||| ||| | |||| |
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| T |
24571572 |
ttcaattcttttggaaagcgttacgttgtcacggctagtccaaggttgatggtggagccatttgttaagaatttgttgggaggtgatagagtgattggga |
24571473 |
T |
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| Q |
101 |
ctgaa-ttgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaaga |
182 |
Q |
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| T |
24571472 |
ctgaacttga-ggtgaccaaatcaggaagggtaactgggtttgttaaggaacctggtgttcttgttggggagctcaagaaaga |
24571391 |
T |
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