View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_37 (Length: 223)
Name: NF3123_high_37
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 38468102 - 38467909
Alignment:
| Q |
18 |
atctaacgcttgcctgattcttagtgtgtgacaagagctctataataccaaatactgttaattagacaattattttgcatgtgcataactctctgcttag |
117 |
Q |
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| T |
38468102 |
atctaacgcttgcgtgattcttagtgtgtgacaagagctctataataccaaatactgttaattaaacaattattttgcatgtgcataactctctgcttag |
38468003 |
T |
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| Q |
118 |
ctgatgctnnnnnnnttgctttccggtgatttctataaatacaacacatgaatttagttatccgtatttgttttatattcatcatcctatgcta |
211 |
Q |
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| T |
38468002 |
ctgatgctaaaaaaattgctttccggtgatttctataaatacaacacatgaatttagttatccgtatttgttttatattcatcatcctatgcta |
38467909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 38448415 - 38448365
Alignment:
| Q |
75 |
ttaattagacaattattttgcatgtgcataactctctgcttagctgatgct |
125 |
Q |
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| T |
38448415 |
ttaattagacacttattttggatgtgtataactctctccttagctgatgct |
38448365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 38549856 - 38549906
Alignment:
| Q |
75 |
ttaattagacaattattttgcatgtgcataactctctgcttagctgatgct |
125 |
Q |
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|||||| |||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
38549856 |
ttaattggacacttattttggatgtgtataactctctgcttagctgatgct |
38549906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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