View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_5 (Length: 461)
Name: NF3123_high_5
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 28094136 - 28093699
Alignment:
| Q |
16 |
catgcatttgttggaaatagaggttactagaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094136 |
catgcatttgttggaaatagaggttactagaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaag |
28094037 |
T |
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| Q |
116 |
caaaataaaatgttgatagattattagacatctatcaaaatcctctttatgtaatattgtaatgcaacaataccacattta---agtttatattttgaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | || ||||||||||||| |
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| T |
28094036 |
caaaataaaatgttgatagattattagacatctatcaaaatcctctttatgtaatattgtaatgcaacaaaataaaatgttgatagattatattttgaat |
28093937 |
T |
|
| Q |
213 |
ccccttcacatttgctccggttgaatgcgtatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatg |
312 |
Q |
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| T |
28093936 |
ccccttcacatttgctccggttgaatgcgtatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatg |
28093837 |
T |
|
| Q |
313 |
aaccattggtgcaaacacgaatactgaacgcgacattgaccaagacacttcggcacccatagcatttggaaaaatgaattaattgaatgtaatccccttc |
412 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28093836 |
aaccattggtgcaaacacgaatactgaacgtgacattgaccaagacacttcggcacccatagcatttggaaaaatgaattaattgaatgtaatcctcttc |
28093737 |
T |
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| Q |
413 |
cgggaccctgtgtacgcgggagctttactgcacaggtt |
450 |
Q |
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| T |
28093736 |
caagaccctgtgtacgcgggagctttactgcaccggtt |
28093699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 405
Target Start/End: Original strand, 41330312 - 41330341
Alignment:
| Q |
376 |
atttggaaaaatgaattaattgaatgtaat |
405 |
Q |
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| T |
41330312 |
atttggaaaaatgaattaattgaatgtaat |
41330341 |
T |
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