View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_high_6 (Length: 432)
Name: NF3123_high_6
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 234 - 417
Target Start/End: Original strand, 22203294 - 22203477
Alignment:
| Q |
234 |
aacaagttcaaattgcaagctgcataaggttgagatagaatctttttgtttttctggtataaaatgatgtcaagttttaatagtactactatggccacaa |
333 |
Q |
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| T |
22203294 |
aacaagttcaaattgcaagctgcataaggttgagatagaatctttttgtttttctggtagaaaatgatgtcaagttttaatagtactactatggccacaa |
22203393 |
T |
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| Q |
334 |
cacgtggtgctgacataacctggcacactagtacttactactaaccatgatttcacaagatgccatcgtactcagtacttgatg |
417 |
Q |
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| T |
22203394 |
cacgtggtgctgacataacctggcacactagtacttactactaaccatgatttcacaagatgccatcgtactcagtacttgatg |
22203477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 22202889 - 22203101
Alignment:
| Q |
13 |
tgaaaatcaaaacgaaagtgggggtacttgcctataaggtcatcagtgtggctctgcccgacggtgatcca-tatgattttgtaaaaactacactttgta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
22202889 |
tgaaaatcaaaacgaaagtgggggtacttgcctataaagtcgtcagtgtggctctgcccgacggtgatccactatgattttgtaaaaactacattttgta |
22202988 |
T |
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| Q |
112 |
gctttggaaaat------------ccgtatttcttatatatttaccgtgatatcaaacccactttaattccattttgtctttctataatggcttttggac |
199 |
Q |
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| T |
22202989 |
actttggaaagtctgagtggattaccataattctgatatatttaccgtgatatcaaacccactttaattcca-tttgtctttctataatgccttttggac |
22203087 |
T |
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| Q |
200 |
tgaattaaaattga |
213 |
Q |
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| T |
22203088 |
tcaattaaaattga |
22203101 |
T |
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