View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_12 (Length: 351)
Name: NF3123_low_12
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 48318272 - 48318553
Alignment:
| Q |
55 |
gatccccgaactttacgtatattatgcattatttctacaaattgagctaaactcgt-atcataaatgtttattatataagtgtttatgcatgttatttat |
153 |
Q |
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|||||||||||||||| ||||||||||||| || |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48318272 |
gatccccgaactttacatatattatgcattgttcctacgaattgagctaaactcattatcataaatgtttattatataagtgtttatgcatgttatttat |
48318371 |
T |
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| Q |
154 |
aacaaagcataaaataaagtcaaattgtatttacataaactattttcataagtttatctagagaatttatgaaaataatagctgaaaacggattatagac |
253 |
Q |
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| T |
48318372 |
aacaacgcataaaataaagtcaaattgtatttacataaactattttcataagtttatctggagaatttatgaaaataatagctgaaaacggattatagac |
48318471 |
T |
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| Q |
254 |
atgttataagcaaccagttctaaaaatgtttatgtgagtagataaactcaaaacgatctaaacacaagaagtatgtgaatat |
335 |
Q |
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| T |
48318472 |
atgttataagcaaacagttctaaaaatgtttatgtgagtagataaactcaaaacgatctaaacacaagaagtatgtgaatat |
48318553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 6265051 - 6265096
Alignment:
| Q |
151 |
tataacaaagcataaaataaagtcaaattgtatttacataaactat |
196 |
Q |
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| T |
6265051 |
tataacaaaaaataaaataaagtcaaattgtttttacattaactat |
6265096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 48318202 - 48318235
Alignment:
| Q |
1 |
agccaatgtttaactaaccacttataacataaat |
34 |
Q |
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| T |
48318202 |
agccaatgtttaactaaccgcttataacataaat |
48318235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 6933076 - 6933044
Alignment:
| Q |
149 |
tttataacaaagcataaaataaagtcaaattgt |
181 |
Q |
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| T |
6933076 |
tttataacaaaacataaaataaagtcaaattgt |
6933044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 32006552 - 32006502
Alignment:
| Q |
58 |
ccccgaactttacgtatattatgcattatttctacaaattgagctaaactc |
108 |
Q |
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| T |
32006552 |
ccccgaactttacatatattatgcattatccctaccaactgagctaaactc |
32006502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 42659628 - 42659579
Alignment:
| Q |
59 |
cccgaactttacgtatattatgcattatttctacaaattgagctaaactc |
108 |
Q |
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| T |
42659628 |
cccgaaccttacatatattatgcattatttatatcaattgagctaaactc |
42659579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 27481449 - 27481421
Alignment:
| Q |
113 |
cataaatgtttattatataagtgtttatg |
141 |
Q |
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| T |
27481449 |
cataaatgtttattatataagtgtttatg |
27481421 |
T |
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