View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_14 (Length: 333)
Name: NF3123_low_14
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 35263330 - 35263019
Alignment:
| Q |
6 |
actgagatgaaatatgtgtagtgtaggaatgtt-agttttggtaggctccaattctcataccatacccatgtgttatgagtacgtactacatcacaaata |
104 |
Q |
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| T |
35263330 |
actgaaatgaaatatgtgtagtgtaggaatgtttagttttggtaggctccaattctcataccatacccatgtgttatgagtacgtactacatcacaaata |
35263231 |
T |
|
| Q |
105 |
aaatgtgtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacaaagacaagctcgtggtattgcagtgt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35263230 |
aaatgtgtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacgaagacaagctcgtggtattgcagtgt |
35263131 |
T |
|
| Q |
205 |
agtctattgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgtttcatttcggtgga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35263130 |
agtctattgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgtttcatttcggtgga |
35263031 |
T |
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| Q |
305 |
taagaaagaaaa |
316 |
Q |
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|||||||||||| |
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| T |
35263030 |
taagaaagaaaa |
35263019 |
T |
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