View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3123_low_15 (Length: 326)
Name: NF3123_low_15
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 7743827 - 7743525
Alignment:
| Q |
19 |
atgcattcaacaggacagaaacatttcataccaatttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7743827 |
atgcattcaacaggacagaaacatttcataccaatttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacatt |
7743728 |
T |
|
| Q |
119 |
atcaacattaactacctgttgaaagggatataaattaggtgacaaattaagaatagggatagaatgatgaatgtccaagaatacagtacatactttggca |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7743727 |
atcaacattcactacctgttgaaagggatataaattaggtgacaaattaagaatagggatagaatgatgaatgtccaagaatacagtacatactttggca |
7743628 |
T |
|
| Q |
219 |
aggtcccccttgtatgtcccaatcttcattctaatccaagtatctctagcaagatcaatggccttgctttcaactgacagcacattagtcatttctctca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
7743627 |
aggtcccccttgtatgtcccaatcttcattctaatccaagtatctctagcaagatcaatggccttgctttcaactgacagcacatcagtcatttctctta |
7743528 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
|
|
| T |
7743527 |
ttg |
7743525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 40865357 - 40865051
Alignment:
| Q |
19 |
atgcattcaacaggacagaaacatttcataccaatttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacatt |
118 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
40865357 |
atgcattcaacaagacagaaacattccataccaatttgtttgcgagagcctgtaaatctatcctcggaattagtttcactctaaccctctgccgtacatt |
40865258 |
T |
|
| Q |
119 |
atcaacattaactacctgttgaaagggatataaattaggtgacaaattaagaat-----agggatagaatgatgaatgtccaagaatacagtacatactt |
213 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||| ||| |||||||||| ||||||| |
|
|
| T |
40865257 |
atcaacatccactacctgttgaa-gggatataaattaggtgacaaattaagaatgtatgagggatagagtcatgaatttcccagaatacagtgcatactt |
40865159 |
T |
|
| Q |
214 |
tggcaaggtcccccttgtatgtcccaatcttcattctaatccaagtatctctagcaagatcaatggccttgctttcaactgacagcacattagtcatttc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
40865158 |
tggcaaggtcccccttgtatgtcccaatcttcattctaacccaagtatctctagcaagatcaatggctttgctttcaactgacagcacatcagtcatttc |
40865059 |
T |
|
| Q |
314 |
tctcattg |
321 |
Q |
| |
|
||| |||| |
|
|
| T |
40865058 |
tcttattg |
40865051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University