View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_17 (Length: 312)
Name: NF3123_low_17
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_17 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 30842027 - 30841746
Alignment:
| Q |
13 |
aatatcaatagtcgtcatataaattttactgcacatttttatctttttgaagcaccatgtattatataagttgacacatttccctcatatcacacaagca |
112 |
Q |
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| T |
30842027 |
aatatcaatagtcctcatataaattttactgcacatttttatctttttgaagcaccatgtattatataagttgacacatttccctcatatcacacaagca |
30841928 |
T |
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| Q |
113 |
aaaggaagggaaacaatattttagcaataaaaaatggagaagaaagtcataaccaacaaagtgcattgtttggtgttaccatatccagcacaaggtcaca |
212 |
Q |
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| T |
30841927 |
aaaggaagggaaacaatattttagcaataaaaaatggagaagaaagtcataaccaacaaagtgcattgtttggtgttaccctatccagcacaaggtcaca |
30841828 |
T |
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| Q |
213 |
taaatccaatgcttcaattctctaaggatttgcaacatgaagggataagagtgactttagtcaccaccctttaccaccgcaa |
294 |
Q |
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| T |
30841827 |
taaatccaatgcttcaattctctaaggatttgcaacatgaagggataagagtgactttagtcaccaccctttaccaccgcaa |
30841746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 30848423 - 30848140
Alignment:
| Q |
14 |
atatcaatagtcgtcatataaattttactgcacatttt--tatctttttgaagcaccatgtattatataagttgacacatttccctcatatcacacaagc |
111 |
Q |
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| T |
30848423 |
atatcaatagttgtcatataaattttattacacattttgatatcttttcgaagcactatgtattatataagttgacacattcccatcatatcacacaagc |
30848324 |
T |
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| Q |
112 |
aaaaggaagggaaacaat-atttt-agcaataaaaaa--tggagaagaaagtcataaccaacaaagtgcattgtttggtgttaccatatccagcacaagg |
207 |
Q |
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| T |
30848323 |
aaaagagaggcaaaaaaacattttcatcgataaaaaaaatggagaagaaaatcatagccaacaaagttcattgtttggtgttatcatatccattacaagg |
30848224 |
T |
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| Q |
208 |
tcacataaatccaatgcttcaattctctaaggatttgcaacatgaagggataagagtgactttagtcaccaccctttaccaccg |
291 |
Q |
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| T |
30848223 |
tcacataaatccaatgcttcaattctccaagcttttgcaacatgaaggggtaagagtgacattagtgaccacccgttaccaccg |
30848140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 30856586 - 30856469
Alignment:
| Q |
167 |
aacaaagtgcattgtttggtgttaccatatccagcacaaggtcacataaatccaatgcttcaattctctaaggatttgcaacatgaagggataagagtga |
266 |
Q |
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| T |
30856586 |
aacaaagtgcattgtttggtcttatcatttccagctcaaggtcacattaatcccatgctacaattctccaagcttttacaacaagaaggaataatagtaa |
30856487 |
T |
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| Q |
267 |
ctttagtcaccacccttt |
284 |
Q |
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| T |
30856486 |
cactagtcacaacccttt |
30856469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 13697443 - 13697400
Alignment:
| Q |
191 |
ccatatccagcacaaggtcacataaatccaatgcttcaattctc |
234 |
Q |
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| T |
13697443 |
ccatatccaacacaaggtcacataaacccaatgcttcaattctc |
13697400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 13726473 - 13726424
Alignment:
| Q |
185 |
gtgttaccatatccagcacaaggtcacataaatccaatgcttcaattctc |
234 |
Q |
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| T |
13726473 |
gtgtttccatatccattacaaggtcacataaaccctatgcttcaattctc |
13726424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 88919 - 88953
Alignment:
| Q |
191 |
ccatatccagcacaaggtcacataaatccaatgct |
225 |
Q |
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| T |
88919 |
ccatatccagcacaaggtcacataaacccaatgct |
88953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 26676560 - 26676526
Alignment:
| Q |
191 |
ccatatccagcacaaggtcacataaatccaatgct |
225 |
Q |
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| T |
26676560 |
ccatttccagcacaaggtcacataaatccaatgct |
26676526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 26903748 - 26903714
Alignment:
| Q |
191 |
ccatatccagcacaaggtcacataaatccaatgct |
225 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
26903748 |
ccatttccagcacaaggtcacataaatccaatgct |
26903714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 26948168 - 26948134
Alignment:
| Q |
191 |
ccatatccagcacaaggtcacataaatccaatgct |
225 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
26948168 |
ccatttccagcacaaggtcacataaatccaatgct |
26948134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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