View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_19 (Length: 291)
Name: NF3123_low_19
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 48317900 - 48318190
Alignment:
| Q |
1 |
aagccttacaagcgtgacacacggttgttggagtcacatgtaacatgaaaccaagtacatggattaaccaatgttgggtcccagctctgaagcacattgt |
100 |
Q |
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| T |
48317900 |
aagccttacaagcgtgacacacggttgttggagtcacatgtaacatgaaaccaagtacatggattaaccaatgttgggtcccagctctgaagcacattgt |
48317999 |
T |
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| Q |
101 |
tggggtcagaaagactgttcctaaaaacatgaagagcattccctacacaaacaaccaaaaaccacttcatgtcaaaactatatttttgaacttaatcaaa |
200 |
Q |
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| T |
48318000 |
tggggtcagaaagactgttcctaaaaacatgaagagcattccctacacaaacaaccaaaaaccacttcatctcaaaactatatttttgaacttaatcaaa |
48318099 |
T |
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| Q |
201 |
ttatggaagccaagtcaattctgttttctaaccaataaacgaccaaaagaaattggaaatattctaagcacatgtattttaatccccaaaa |
291 |
Q |
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| T |
48318100 |
ttatggaagccaagtcaattctgttttctaaccaataaaagaccaaaagaaattggcaatattcgaagcacatgtattttcatccccaaaa |
48318190 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 250648 - 250539
Alignment:
| Q |
25 |
ttgttggagtcacatgtaacatgaaaccaagtacatggattaaccaatgttgggtcccagctctgaagcacattgttggggtcagaaagactgttcctaa |
124 |
Q |
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||||||||||| || |||||||| ||||||||||||| ||||| | || ||||||||||| ||||| || |||||||| |||||||| ||| | || | |
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| T |
250648 |
ttgttggagtcgcaggtaacatggaaccaagtacatgagttaacaagagtagggtcccagctttgaaggacgttgttgggatcagaaagtctggttctga |
250549 |
T |
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| Q |
125 |
aaacatgaag |
134 |
Q |
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| T |
250548 |
aagcatgaag |
250539 |
T |
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