View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_2 (Length: 777)
Name: NF3123_low_2
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 206 - 451
Target Start/End: Complemental strand, 25739053 - 25738808
Alignment:
| Q |
206 |
caaatagccaagataatcttgaatcaccatgtgattctcatttctttgaaaataacttccaaaaaagactcccagcacactcagaattctacaggattcc |
305 |
Q |
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| T |
25739053 |
caaatagccaagataatcttgaatcaccatgtgattctcatttctttcaaaataacttccaaaaaagactcccagcacactcagaattctacaggattcc |
25738954 |
T |
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| Q |
306 |
atggtctgcatcctgctgtgctggccagaaacttctgcataaatgatacttcgagtatccctaacagttgccataacaaacagcctacttcgagttgaat |
405 |
Q |
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| T |
25738953 |
atggtctgcattctgctgtgctggcgagaaacttctgcataaatgatacttcgagtgtccataatagttgccataacaaacagcctacatcgagttgaat |
25738854 |
T |
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| Q |
406 |
tgcaattaaactttctataaatcgaatgtttcttattttccattct |
451 |
Q |
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| T |
25738853 |
ttcaagtaaactttctataaatcgaatgtttcttattttccattct |
25738808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 479 - 746
Target Start/End: Complemental strand, 25744734 - 25744468
Alignment:
| Q |
479 |
actgaatgaataaaaattaggatttggattagattttcttaatttttaaatcag----agtctaatgtagaagtgcttacctttatgagttcaattagtt |
574 |
Q |
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| T |
25744734 |
actgaatgaataaaaattaggattaggattagattttcttattatttaaaccactctaagtctaatgtggaagtgcttacctttatgagtttaatc-gtt |
25744636 |
T |
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| Q |
575 |
tctaagagaagaaaaataaaattaacaaatatgtttaattatatttctcccaccaattcaaataatacaattaatcaagtgtttaggctcaagttgttag |
674 |
Q |
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| T |
25744635 |
tctgaaagaagaaaaataaaattaataaa-atatttaattatatttctcccaccaattcaaataattcaattaatcaagtg---aggctcaagtggttag |
25744540 |
T |
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| Q |
675 |
ttaatgagcaacgaagcatttaggagaactcgagtttcattttttacttacctcccggctgaatttcgaatt |
746 |
Q |
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| T |
25744539 |
ttaatgagcgacaaatcatttaggagaattaaagttccattttttacttacctcctggcagaacttcgaatt |
25744468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 25739187 - 25739092
Alignment:
| Q |
109 |
tccactatctctgctatgacaacatactgtccacaaaaattcaaataattcactcttgctccatacacgaggccgtaattcatagattccaccaat |
204 |
Q |
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| T |
25739187 |
tccactatctcggctatgacaacatactgtccacaaaaattcaaataaatcactcttgctccatacacgaggccgtaattcatagattccaccaat |
25739092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 25738302 - 25738189
Alignment:
| Q |
539 |
atgtagaagtgcttacctttatgagttcaattagtttctaagagaagaaaaataaaattaacaaatatgtttaattatatttctcccaccaattcaaata |
638 |
Q |
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| T |
25738302 |
atgtagaagtgcttacctttatgagtttaat-agtttctgaaagaa-aaaaataaaattaacaaaaatgttta-ttatatttcatccaccaattcaaata |
25738206 |
T |
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| Q |
639 |
atacaattaatcaagtg |
655 |
Q |
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| T |
25738205 |
atacaattaatcaagtg |
25738189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 759
Target Start/End: Complemental strand, 25738166 - 25738100
Alignment:
| Q |
693 |
tttaggagaactcgagtttcattttttacttacctcccggctgaatttcgaattcttagggcccctt |
759 |
Q |
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| T |
25738166 |
tttaggagaactcaagttccattttttacttacctcccgaccaaaattcggattgttagggcccctt |
25738100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 45303146 - 45303206
Alignment:
| Q |
288 |
agaattctacaggattccatggtctgcatcctgctgtgctggccagaaacttctgcataaa |
348 |
Q |
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| T |
45303146 |
agaattctacaggcttccacggtctgcgtcctgttgtgctgaccagaaacttctgcataaa |
45303206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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