View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_24 (Length: 270)
Name: NF3123_low_24
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 39299243 - 39299488
Alignment:
| Q |
18 |
cacctatcacacagtttctttcactcctacacttttccatgttctattacatgccaatttcttgtacttattgttttgcatttaaaaataagatttaatt |
117 |
Q |
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| T |
39299243 |
cacctatcacacaatttctttcactcctacacttttccatgttctattacatgccaatttcttgaacttattgttttgcatttaaaaataagatttaatt |
39299342 |
T |
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| Q |
118 |
gatatggtgtaaatatattttacacc--------gtcatattataaataggagtctatattatgtagctattattcacttgcaaagtaaagtaactttat |
209 |
Q |
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| T |
39299343 |
gatatggtgtaaatatattttacaccgtcataatgtcatattataaataggagtctatattatgtagctattattcacttgc-----aaagtaactttat |
39299437 |
T |
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| Q |
210 |
tcttctcaatacattgatatgaatcaaaacgatcttcagcctctacctttg |
260 |
Q |
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| T |
39299438 |
tcttctcaatacattgatatgaatcaaaacgatcttcagcctctacctttg |
39299488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 26879392 - 26879451
Alignment:
| Q |
204 |
ctttattcttctcaatacattgatatgaatcaaaacgatcttcagcctctacctttgcta |
263 |
Q |
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| T |
26879392 |
cttttttcttctctataccttgatatggatcaaaacgatctacaacctctacctttgcta |
26879451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 26878914 - 26878964
Alignment:
| Q |
18 |
cacctatcacacagtttctttcactcctacacttttccatgttctattaca |
68 |
Q |
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| T |
26878914 |
cacctataacacaatttgcttcactcctacacttttccatgttctattaca |
26878964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 26879328 - 26879364
Alignment:
| Q |
147 |
atattataaataggagtctatattatgtagctattat |
183 |
Q |
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| T |
26879328 |
atattctaaataggagtctatattatgtagttattat |
26879364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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