View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_25 (Length: 259)
Name: NF3123_low_25
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 52741965 - 52742076
Alignment:
| Q |
131 |
acatcaaaattttcatcaatcccttgcttctaattttcatcttcgtcaatctcaaataaaaactcaaaattaaatgttgataaaacccagaaatcaaaac |
230 |
Q |
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| T |
52741965 |
acatcaaaattttcatcaatcccttgcttctaattttcatcttcatcaatctcaaataaaaactcaaaattaaatgttgataaaacccagaaatcaaaac |
52742064 |
T |
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| Q |
231 |
cctaccatacac |
242 |
Q |
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| T |
52742065 |
cctaccatacac |
52742076 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 39591421 - 39591513
Alignment:
| Q |
153 |
cttgcttctaattttcatcttcgtcaatctcaaa--taaaaactcaaaattaaatgttgataaaacccagaaatcaaaaccctaccatacaca |
243 |
Q |
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| T |
39591421 |
cttgcttctaactttcatcttcatcaatctcaaaaataaaaacccaaaattaaatgttgataaaacccaaaaatcaaaatcctacaatacaca |
39591513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 52980787 - 52980703
Alignment:
| Q |
153 |
cttgcttctaattttcatcttcgtcaatctcaaa--taaaaactcaaaattaaatgttgataaaacccagaaatcaaaaccctac |
235 |
Q |
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| T |
52980787 |
cttgcttctaacttttatcttcatcaatctcaaaaataaaaacccaaaattaaatgttgataaaacccataaatcaaaatcctac |
52980703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 49333824 - 49333743
Alignment:
| Q |
131 |
acatcaaaattttcatcaatcccttgcttctaattttcatcttcgtcaatctc--aaataaaaactcaaaattaaatgttga |
210 |
Q |
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| T |
49333824 |
acatcaaaatcttcatcaatttcatgcttctgatttctatcttcatcaatctccgaaataataactcaaaattaaattttga |
49333743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 29077496 - 29077418
Alignment:
| Q |
142 |
ttcatcaatcccttgcttctaattttcatcttcgtcaatctca--aataaaaactcaaaattaaatgttgataaaaccca |
219 |
Q |
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| T |
29077496 |
ttcatcaatctcatacttctaacttccatcttcatcaatctcagaaatagaaactcataattaaatgttga-aaaaccca |
29077418 |
T |
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