View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_27 (Length: 253)
Name: NF3123_low_27
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_27 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 33733040 - 33732803
Alignment:
| Q |
15 |
atgaagttgaagaaggagagagaatattaagagctagttaaactaagaagagtgatactatagcacaacactaatagtgcattctattgtttccatcaaa |
114 |
Q |
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| T |
33733040 |
atgaagttgaagaaggagagagaatattaagagctagttaaactaagaagagtgatactatagcatat-actaatagtgcattctattgtttccatcaaa |
33732942 |
T |
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| Q |
115 |
acacaagaccttaaagatggtaagagctccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttac |
214 |
Q |
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| T |
33732941 |
acacaagaccttaaagatggtaagagctccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttac |
33732842 |
T |
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| Q |
215 |
atccaaaaacatggccatggcaattggcgtgccctccca |
253 |
Q |
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| T |
33732841 |
atccaaaaacatggccatggcaattggcgtgccctccca |
33732803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 16128231 - 16128106
Alignment:
| Q |
128 |
aagatggtaagagctccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttacatccaaaaacatg |
227 |
Q |
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|||||||| |||||||| ||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||| ||||| |||||| | ||||||| |
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| T |
16128231 |
aagatggttagagctccatgttgtgaaaagaaaggattgaagaaaggtccttggaccttagaggaagatgaaatcctcacatcctacatcaacaaacatg |
16128132 |
T |
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| Q |
228 |
gccatggcaattggcgtgccctccca |
253 |
Q |
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| T |
16128131 |
gacatagcaattggcgtgctctccca |
16128106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 16139285 - 16139164
Alignment:
| Q |
128 |
aagatggtaagagctccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttacatccaaaaacatg |
227 |
Q |
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|||||||| || ||||||||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||| ||||| |||||| | ||||||| |
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| T |
16139285 |
aagatggttagggctccttgttgtgaaaagaaaggattgaagaaaggtccttggaccttagaggaagatgaaatcctcacatcatacatcaataaacatg |
16139186 |
T |
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| Q |
228 |
gccatggcaattggcgtgccct |
249 |
Q |
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| T |
16139185 |
gacatagcaattggcgtgccct |
16139164 |
T |
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