View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_3 (Length: 696)
Name: NF3123_low_3
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_3 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 10 - 682
Target Start/End: Complemental strand, 45656580 - 45655908
Alignment:
| Q |
10 |
catcatcatctcttgtcctcttgcacatgatgcacgattccttgatgcatgtgtgaaactcacgtaacctagaagctttctcaatgataatagggtcaat |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45656580 |
catcatcatctcttgtcctcttacacatgatgcacgattccttgatgcatgtgtgaaactcacgtaacctagaagctttctcaatgataatagggtcaat |
45656481 |
T |
|
| Q |
110 |
attaccggtaaacttatactcttcaatctcataataaggatctggaacgagttccacatgaaaagaatgtgaaatgttgagcacttccaaatgttttagc |
209 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45656480 |
atcaccggtaaacttatactcttcaatctcataataaggatctggaacgagttccacatgacaagaatgtgaaatgttgagcacttccaaatgttttagc |
45656381 |
T |
|
| Q |
210 |
ttatttagaattaaaatgagagctctctttgacaatcctgaacatcgcagactcaatacttttaggtttggaagacatcttgtgagtgcataagcaaatt |
309 |
Q |
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| T |
45656380 |
ttatttagaattaaaatgagagctctctttgacaatcctgaacatcgcagactcaatacttttaggtttggaagacatcttgtgagtgcataagcaaatt |
45656281 |
T |
|
| Q |
310 |
gtatgccaatgcaacccataaccttgagttctctaaagttcttgcaatgctttgagatttcttcaaaaacatatcggggattatatatgcctggcattgt |
409 |
Q |
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| T |
45656280 |
gtatgccaatgcaacccataaccttgagttctctaaagttcttgcaatgctttgagatttcttcaaaaacatatcggggattatatatgcctggcattgt |
45656181 |
T |
|
| Q |
410 |
catagactcaagatctttccagcctctaattgcctttcgaattcccattctttttattcggttccacgatacaaagactagtcgtcttacaagtggacac |
509 |
Q |
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| T |
45656180 |
catagactcaagatctttccagcctctaattgcctttcgaattcccattctttttattcggttccacgatacaaagactagtcgtcttacaagtggacac |
45656081 |
T |
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| Q |
510 |
ctgccacaaggtatacaataaaatgcaattatcttctaattctataattcaattttagtcgtgagatgtatattattgaaagagagatcaatatctaaag |
609 |
Q |
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| T |
45656080 |
ctgccacaaggtatacaataaaatgcaattatcttctaattctataatccaattttagtcgtgagatgtatattattgaaagagagatcaatatctaaag |
45655981 |
T |
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| Q |
610 |
gttgtatcaattaatatttaatgtatgcnnnnnnncgtatatagcgatattctatataatataaagttttagg |
682 |
Q |
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| T |
45655980 |
gttgtatcaattaatatttgatgtatgcaaaaaaatgtatatagcgatattctatataatataaagttttagg |
45655908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 330 - 538
Target Start/End: Original strand, 40948219 - 40948427
Alignment:
| Q |
330 |
accttgagttctctaaagttcttgcaatgctttgagatttcttcaaaaacatatcggggattatatatgcctggcattgtcatagactcaagatctttcc |
429 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | | ||| ||||||||||| ||||| |||| | ||| |
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| T |
40948219 |
accttgagttctctaaagttcttgcaatgctttgtaatttcttcaaaaacatatcctgggtattcagtgcaaggcattgtcatggactctagatttgtcc |
40948318 |
T |
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| Q |
430 |
agcctctaattgcctttcgaattcccattctttttattcggttccacgatacaaagactagtcgtcttacaagtggacacctgccacaaggtatacaata |
529 |
Q |
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| | ||||||||| || |||||| || | ||||| |||||||| |||||||||||||||||||||||| |||| ||||||||| || ||| |||||| |
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| T |
40948319 |
acaccctaattgcccttacaattcctatcttctttatacggttccaagatacaaagactagtcgtcttacatgtgggcacctgccataatgtacacaata |
40948418 |
T |
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| Q |
530 |
aaatgcaat |
538 |
Q |
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||| |||| |
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| T |
40948419 |
caatacaat |
40948427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 40948088 - 40948209
Alignment:
| Q |
163 |
ccacatgaaaagaatgtgaaatgttgagcacttccaaatgttttagcttatttagaattaaaatgagagctctcttt-gacaatcctgaacatcgcagac |
261 |
Q |
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|||||||| ||||||||||||||||||||||||| || | |||||||| || || ||||||||||||||| ||||| ||||| ||||||||||| |||| |
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| T |
40948088 |
ccacatgacaagaatgtgaaatgttgagcacttctaagtcttttagctcatctaatattaaaatgagagct-tctttcgacaaccctgaacatcgaagac |
40948186 |
T |
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| Q |
262 |
tcaatacttttaggtttggaaga |
284 |
Q |
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|||| ||||| | |||||||||| |
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| T |
40948187 |
tcaacactttcaagtttggaaga |
40948209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 172 - 512
Target Start/End: Original strand, 38624 - 38964
Alignment:
| Q |
172 |
aagaatgtgaaatgttgagcacttccaaatgttttagcttatttagaattaaaatgagagctctctttgac-aatcctgaacatcgcagactcaatactt |
270 |
Q |
| |
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||||||||||||| || |||||||| |||| || || ||| || |||||| ||||||||| ||||| || || ||||||||||| | |||||||||| |
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| T |
38624 |
aagaatgtgaaatatttagcacttctaaatattgtaatctatctaaaattaagatgagagct-tctttcaccaaccctgaacatcgaatactcaatactc |
38722 |
T |
|
| Q |
271 |
ttaggtttggaagacatcttgtgagtgcataagcaaattgtatgccaatgcaacccataaccttgagttctctaaagttcttgcaatgctttgagatttc |
370 |
Q |
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||| |||||||||| | ||||||| | |||||||||| | | | |||||||||||||||||||| || ||||||||| | |||| ||||| |
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| T |
38723 |
ttaagtttggaagatttattgtgagagatgaagcaaattgcaaatttaaacgtcccataaccttgagttctctgaatttcttgcaactccttgaaatttc |
38822 |
T |
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| Q |
371 |
ttcaaaaacatatcggggattatatatgcctggcattgtcatagactcaagatctttccagcctctaattgcctttcgaattcccattctttttattcgg |
470 |
Q |
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|| ||||| ||| |||| | |||| ||||||||||| ||||| ||||||||||| ||| |||| |||||||| ||| ||| | | || |||| | |
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| T |
38823 |
ttgaaaaatataatttggatattctatggtaggcattgtcattgactctagatctttccatcctttaatagcctttcgcattaccactttgttgattctg |
38922 |
T |
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| Q |
471 |
ttccacgatacaaagactagtcgtcttacaagtggacacctg |
512 |
Q |
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| T |
38923 |
ttccaagatacgaagactaatcgtcttagaagtggacacctg |
38964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 38491 - 38548
Alignment:
| Q |
33 |
cacatgatgcacgattccttgatgcatgtgtgaaactcacgtaacctagaagctttct |
90 |
Q |
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||||||||||| ||||| || |||||||||||||| ||||| ||| ||||||| |||| |
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| T |
38491 |
cacatgatgcatgattctttcatgcatgtgtgaaattcacgcaacttagaagccttct |
38548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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