View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_31 (Length: 248)
Name: NF3123_low_31
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33306310 - 33306073
Alignment:
| Q |
1 |
ttagttatttaactataaccaattattataacatccataactgtcaagacagttagttagttagctaccgaactacgcacttacttgtctaacaagtaat |
100 |
Q |
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| T |
33306310 |
ttagttatttaactataaccaattattataacatccataactgtcaagacagttagttagttagttactgaactacgcacttacttgtctaacaagtaat |
33306211 |
T |
|
| Q |
101 |
tgcctaaactaatatttaattacactttaccaccctctctcaaggtggaatatatatccaatgttccaagcttgttttccaatgaggtaaatggtcatgg |
200 |
Q |
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| T |
33306210 |
tgcctaaactaatatttaattacactttaccaccctctctcaaggtggaatatatatccaatgttccaagcttgttttccaatgaggtaaatggtcatgg |
33306111 |
T |
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| Q |
201 |
atgaagaggtttggtgagaatatctgccacttgttcat |
238 |
Q |
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| T |
33306110 |
atgaagaggtttggtgagaatatctgccacttgttcat |
33306073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4307451 - 4307513
Alignment:
| Q |
1 |
ttagttatttaactataaccaattattataacatccataactgtcaagacagttagttagtta |
63 |
Q |
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|||||| |||||||||||| || |||| |||| |||||||||||||| | ||||||||||||| |
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| T |
4307451 |
ttagttgtttaactataactaactattgtaacttccataactgtcaaaagagttagttagtta |
4307513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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