View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_32 (Length: 247)
Name: NF3123_low_32
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 45170724 - 45170481
Alignment:
| Q |
1 |
tacttaaagcatataggttttgttttgaagaacaaataaattaagtacaaattattgtattattgtatatcatcaacagccaaggcctctactgccacaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45170724 |
tacttaaagcatatagattttgttttgaagaacaaataaataaagtacaaattattgtattattgtatatcatcaacagccaaggcctctactgccaca- |
45170626 |
T |
|
| Q |
101 |
agttatttcactcctcggtaatgctatctagacttggttgccaataatcagaagaccatgctctcttaggagagcttctttttcctgccaaatctgtctt |
200 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45170625 |
-gttatttcactcctcagtgatgctatctagacttggttgccaataatcagaagaccatgctctcttaggagagcttctttttcctgccaaatctgtctt |
45170527 |
T |
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| Q |
201 |
cctcttcctgtttgctgtattgctatcacgaaggtctgtgctgctc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45170526 |
cctcttcctgtttgctgtattgctatcacgaaggtcagtgctgctc |
45170481 |
T |
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