View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_33 (Length: 247)
Name: NF3123_low_33
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6352556 - 6352314
Alignment:
| Q |
1 |
tttgaaatctgtccctctaggttataaggtcgactttaaccactgggttgacacctcatggacttggttcaattaatatttt-ctccatgattgaannnn |
99 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
6352556 |
tttgaaatctatcccttgaggttataaggtcgactttaaccactgggttgacacctcatggacttagtttgattaatatttttctccatgattgaatttt |
6352457 |
T |
|
| Q |
100 |
nnnnattcaagtaaaccaccgaagctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttcc |
199 |
Q |
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| T |
6352456 |
ttttattcaagtaaaccacagtagctaaattttattttgtcatacaggctatccaagacaatagattgtacatacttgatcaccacgacccactctttcc |
6352357 |
T |
|
| Q |
200 |
atatttgaggaaaataaatgcaactgagacaaaggcctatgct |
242 |
Q |
| |
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| T |
6352356 |
atatttgaggaaaataaatgcaaccgagacaaaggcctatgct |
6352314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 7459269 - 7459150
Alignment:
| Q |
122 |
agctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgca |
221 |
Q |
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| T |
7459269 |
agctaaattttattttgtcatacaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgca |
7459170 |
T |
|
| Q |
222 |
actgagacaaaggcctatgc |
241 |
Q |
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| T |
7459169 |
actgagacaaagtcctatgc |
7459150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 6363372 - 6363253
Alignment:
| Q |
123 |
gctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaa |
222 |
Q |
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||||||||| ||||||| |||||||||||| || |||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6363372 |
gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
6363273 |
T |
|
| Q |
223 |
ctgagacaaaggcctatgct |
242 |
Q |
| |
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| ||||| |||||||||||| |
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| T |
6363272 |
ccgagactaaggcctatgct |
6363253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 6424255 - 6424158
Alignment:
| Q |
145 |
aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgct |
242 |
Q |
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|||||||||||||||| | ||||||||| || |||||| | ||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6424255 |
aggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgct |
6424158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 6370223 - 6370115
Alignment:
| Q |
134 |
ttttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaag |
233 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||| ||||||||||| | ||| |||||||||||||||| |||||| |||||| ||||| |
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| T |
6370223 |
ttttgtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaag |
6370124 |
T |
|
| Q |
234 |
gcctatgct |
242 |
Q |
| |
|
|||||||| |
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|
| T |
6370123 |
acctatgct |
6370115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 6274674 - 6274577
Alignment:
| Q |
145 |
aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgct |
242 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| ||| |||||||| || | | ||||||| ||||||||||||||||| |||| |||||||| |||||| |
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| T |
6274674 |
aggctatccaaaccaacaaattgtacatacttgattaccacgactcgttatatccatatctgaggaaaataaatgcagctgatacaaaggcatatgct |
6274577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 6332058 - 6331961
Alignment:
| Q |
145 |
aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgct |
242 |
Q |
| |
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|||||||||||||||| || | |||||||| |||||||| ||||| | ||||||||||||||||||||||| ||||||| |||||||| |||||| |
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| T |
6332058 |
aggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaaggcatatgct |
6331961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 6410299 - 6410251
Alignment:
| Q |
193 |
tctttccatatttgaggaaaataaatgcaactgagacaaaggcctatgc |
241 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6410299 |
tcttaccatatttgaggaaaataaatgcaactggcgcaaaggcctatgc |
6410251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 6321553 - 6321467
Alignment:
| Q |
145 |
aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaa |
231 |
Q |
| |
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|||||||||||||||| || | |||||||| |||||||| ||| | | | ||||||| ||||||||||||||||| |||| |||| |
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| T |
6321553 |
aggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccatatctgaggaaaataaatgcagctgatacaa |
6321467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 6288928 - 6288852
Alignment:
| Q |
143 |
acaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatg |
219 |
Q |
| |
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|||||||||||| ||||| ||| | |||||||| ||| |||| ||| | | |||||||||||||| |||||||||| |
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| T |
6288928 |
acaggctatccataacaagagactttacatacttgattaccaagactcaatatttccatatttgagcaaaataaatg |
6288852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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