View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_4 (Length: 573)
Name: NF3123_low_4
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Original strand, 9493088 - 9493636
Alignment:
| Q |
19 |
taaggtggttgacaattaccctnnnnnnnntaaaagatggttgacattcaaaaaacaattcattaatattattgtcattgcaaatatttaatagaacaat |
118 |
Q |
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| T |
9493088 |
taaggtggttgacaattaccctaaaaaaaataaaagatggttgaccttcaaaaaacaattcactaatattattgtcattgcaaatatttaatagaacaat |
9493187 |
T |
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| Q |
119 |
aagatcctatcctacccaatttaatttcatatacaagtctagtctacataatgaaagtataactaaaacttaatcatagagaaaaatgtggggtaattac |
218 |
Q |
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| T |
9493188 |
aagatcctatcctacccaatttaatttcatatacaagtctagtctacataatgaaagtataactaaaacttaatcatagagaaaaatgtggggtaattac |
9493287 |
T |
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| Q |
219 |
tctacattagttcttcaattcttatgcttcttttttagtgtaaattactacactaaccttgcttcaaatgatgttcaatgcatgaaatcaaggtgtaatc |
318 |
Q |
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| T |
9493288 |
tctacattagttcttcaattcttatgcttcttttttagtgtaaattactacactaaccttgcttcaaatgatgttcaatgcatgaaaacaaggtgtaatc |
9493387 |
T |
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| Q |
319 |
acaaagatgctccaactattcaatacccttttagactccaaaacattcaaccacaaaattgtggcaaaattgggtatgatctttcatgcaatgagaatca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9493388 |
acaaagatgctccaactattcaatacccttttagactccaaaacattcaaccacaaaattgtggcaaaattgggtatgatctttcatgctatgagaatca |
9493487 |
T |
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| Q |
419 |
acaaaccatactaaaattgccaaattcaatcaattttattgtcaacaaaattgattacaagtctcaaacaattcatgtaacatacccaaatggatgtctt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9493488 |
acaaaccatactaaaattgccaaattcaatcaattttattgtcaacaaaattgattacaagtctcaaacaattcatgtaacatacccaaatggatgtctt |
9493587 |
T |
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| Q |
519 |
ccaaaactcctttcaaatcttaatgtaacatccacaccttttcatttca |
567 |
Q |
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| T |
9493588 |
ccaaaactcctttcaaatcttaatgtaacatccacaccttttcatttca |
9493636 |
T |
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