View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3123_low_5 (Length: 538)
Name: NF3123_low_5
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 8517525 - 8517998
Alignment:
| Q |
18 |
catctatgctattaaaggtataaacaaaataagttgttttccatgcagaaagtacttgatgtacacagttcaatatttaaccatgacgaggggagggaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8517525 |
catctatgctattaaaggtataaacaaaataagttgttttcaatgcagaaagtacttgatgtacacagttcaatatttaaccatgacgaggggagggaat |
8517624 |
T |
|
| Q |
118 |
catttaattaatcggatgaacaannnnnnnnnnnnnnnnnnnnntttggtacaatggatgaacaattttataatcaaataagaaatgaacatttgtcagt |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8517625 |
catttaattaatcggatgaacaa------attattattattatttttggtacaatggatgaagaattttataatcaaataagaaatgaacatttgtcagt |
8517718 |
T |
|
| Q |
218 |
g---ttactattcaaagtctcacgttaaataccaacaaacaatgaattggtccaactgataagagaccagaactacttatacacatagtcagagattcga |
314 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| | ||||||||||||| |
|
|
| T |
8517719 |
gttattattattcaaagtctcacgttaaataccaacaaacaatgaattggtccaa-----aagagactagaactccttatacacgtggtcagagattcga |
8517813 |
T |
|
| Q |
315 |
tttctaactcatacatttgnnnnnnnntatagttgaagaggaaaactcaccttatatatctcataggtttctcgataaaaa--tcagttgttgct----- |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| ||| || |
|
|
| T |
8517814 |
tttctaactcatacatttgaaaaaaaatatagttgaagaggagaactcaccttatatgtcttataggtttctcgataaaaaattcagtcgttcctaagtg |
8517913 |
T |
|
| Q |
408 |
-cgatgaataccccgtaccaatatcatgataac-nnnnnnnnntgtctcacattaaataatgatatgggaatacaagagtaatat |
490 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8517914 |
acgatgaataccccataccaatatcatgataacaaaaaaaaaatgtctcacattaaataatgatatgggaatacaagagtaatat |
8517998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 474 - 532
Target Start/End: Original strand, 8518012 - 8518070
Alignment:
| Q |
474 |
gaatacaagagtaatatttgaatactcaatttctaacacacattcaacatttcatttct |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8518012 |
gaatacaagagtaatatttgaatactcaatttctaacacacattcaacatttcatttct |
8518070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University