View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_8 (Length: 402)
Name: NF3123_low_8
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 14977576 - 14977972
Alignment:
| Q |
1 |
tatgtgtttagaagtacttttggtgaaggaattggacactcaaatacaaatgaagagatttatggtgttttgtctttggtgttttggtccgttacattag |
100 |
Q |
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| T |
14977576 |
tatgtgtttagaagtacttttggtgaaggaattggacactcaaatacaaatgaagagatttatggtgttttgtctctggtgttttggtctgttacattag |
14977675 |
T |
|
| Q |
101 |
ttcctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgctaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14977676 |
ttcctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgctaaagt |
14977775 |
T |
|
| Q |
201 |
taattctcttcctaattgtcaattggctgatgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatgttaaaggatttgccttt |
300 |
Q |
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| T |
14977776 |
taattctcttcctaattgtcaattggctgatgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatggtaaaggatttgccttt |
14977875 |
T |
|
| Q |
301 |
aggcttaagtctacacttgagaaaaggaaggttttgcagaagtttttgcttgttcttgctttaattggaacttgtatggttattggtgatgatgtcc |
397 |
Q |
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| T |
14977876 |
aggcttaagtctacacttgagaaaaggaaggttttgcagaagtttttgcttgttcttgctttgattggaacttgtatggttattggtgatggtgtcc |
14977972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 92 - 387
Target Start/End: Original strand, 15027763 - 15028058
Alignment:
| Q |
92 |
ttacattagttcctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagata |
191 |
Q |
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| T |
15027763 |
ttacattagtttctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcacttaactctttgttgtgtagata |
15027862 |
T |
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| Q |
192 |
tgctaaagttaattctcttcctaattgtcaattggctgatgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatgttaaagga |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15027863 |
tgctaaagttaattctcttcctaattgtcaattggctgatgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatggtaaagga |
15027962 |
T |
|
| Q |
292 |
tttgcctttaggcttaagtctacacttgagaaaaggaaggttttgcagaagtttttgcttgttcttgctttaattggaacttgtatggttattggt |
387 |
Q |
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| T |
15027963 |
tttgcctttaggcttaagtctacacttgagaaaaggaaggttttgcagaagtttttgcttgttcttgctttgattgaaacttgtatggttattggt |
15028058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 1807952 - 1808117
Alignment:
| Q |
31 |
attggacactcaaatacaaatgaagagatttatggtgttttgtctttggtgttttggtccgttacattagttcctttggttaaatatgtgttcatagtgt |
130 |
Q |
| |
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|||| ||| ||| ||||||||||||| || | |||||| |||||||| ||||||||| | | || || |||| | | |||||||||||||| |||| |
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| T |
1807952 |
attgaacattcagatacaaatgaagaaatctttggtgtattgtcttttgtgttttggacactaactttgattccacttctgaaatatgtgttcattgtgt |
1808051 |
T |
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| Q |
131 |
taagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgcta |
196 |
Q |
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| |||||||||||||||||||||||||| |||||||| | ||||||||| | |||||| |||||| |
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| T |
1808052 |
tgagagctgatgataatggtgaaggagggacttttgctttgtactctttgctatgtagacatgcta |
1808117 |
T |
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