View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3123_low_9 (Length: 390)
Name: NF3123_low_9
Description: NF3123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3123_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 45170890 - 45171245
Alignment:
| Q |
16 |
atcaattggtgaccgagaacaacaagaaaaaagttatgactgtatttccttcnnnnnnngaagagaaatgactgtatttccttaagtttcatcatgaatt |
115 |
Q |
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| T |
45170890 |
atcaattggtgaccgagaacaacaagaaaaaagttatgactgtatttccttctttttttgaagagaaatgactgtatttccttaagtttcatcatgaatt |
45170989 |
T |
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| Q |
116 |
gcaaaaaagggcagcgaagtataatagtaatgtcatgcaataagacaaatattggtcgatatccggataaaaaattaaacaactttcatagcaataaatg |
215 |
Q |
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| T |
45170990 |
gcaaaaaagggcagcgaagtataatagtaatgtcatgcaataagacaaatattggtcgatatccggataaaaaattaaacaactttcatagcaataaatg |
45171089 |
T |
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| Q |
216 |
gttatattaagactaatattgcagcagatttagctggataccaacatgcaatgaaaaaatcttgtgaacaagaatgaacagaaataaatctacaagatgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45171090 |
gttatattaagactaatattgcagcagatttagctggataccaacatgcaacgaaaaaatcttgtgaacaagaattaacagaaataaatctacaagatgt |
45171189 |
T |
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| Q |
316 |
tagagcctagtggtgtttcgcagtgaggacgttttatgcgggtgtctgggtttgatcct |
374 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45171190 |
tagagccta---gtgtttcgcagtgaggacgttttatgcgggtgtctgggtttgatcct |
45171245 |
T |
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