View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3124_high_3 (Length: 256)
Name: NF3124_high_3
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3124_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 31306050 - 31306280
Alignment:
| Q |
11 |
aatgagctaaagtataaccatctttaagctgctttccagcaatcacaaccctcacttggtcaagtggaatacccactttctcctcaagacttagtttcac |
110 |
Q |
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| T |
31306050 |
aatgagctagagtataactatctttaagctgctttccagcaatcacaaccctcacttggtcaagtggaatacctactttctcctcgagagtgagtttcac |
31306149 |
T |
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| Q |
111 |
atcagctattgtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31306150 |
atcagctattgtatctgaactctctacatccaatgttattgtctttcctgtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaa |
31306249 |
T |
|
| Q |
211 |
tgaagggtggactccttttgaatgttgtaat |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31306250 |
tgaagggtggactccttttgaatgttgtaat |
31306280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 31306388 - 31306508
Alignment:
| Q |
121 |
gtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtgg |
220 |
Q |
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|||||||||||||| || ||||| || || ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
31306388 |
gtatctgaactctcaacctccaaagtaatagtctttccagtcaaagtcttaacaaatatctgcattccacctctcaatctaagcaccaaatgaagggtag |
31306487 |
T |
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| Q |
221 |
actccttttgaatgttgtaat |
241 |
Q |
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| T |
31306488 |
attccttctggatgttataat |
31306508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 31249463 - 31249600
Alignment:
| Q |
105 |
tttcacatcagctattgtatctgaactctctacatccaatgttattgtc-tttccagtcaaagtattcacaaatatttgcattccacctctcaatctaag |
203 |
Q |
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|||||||| | ||||||||||| |||||||||||||||||||||| || ||||| ||||| || || ||||| ||||||||||||||| |||||| ||| |
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| T |
31249463 |
tttcacattacctattgtatcttaactctctacatccaatgttatgatcctttcctgtcaatgttttgacaaaaatttgcattccacctatcaatcgaag |
31249562 |
T |
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| Q |
204 |
caccaaatgaagggtggactccttttgaatgttgtaat |
241 |
Q |
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|||||||||||| | ||| || ||||||||||||||| |
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| T |
31249563 |
caccaaatgaagtgcggattctgtttgaatgttgtaat |
31249600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 31260188 - 31260308
Alignment:
| Q |
121 |
gtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtgg |
220 |
Q |
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|||||||||||||| || ||||| || || || |||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31260188 |
gtatctgaactctcaacctccaaagtaatagtttttccagttaaagtcttaacaaaaatttgcattccgcctctcaatctaagcaccaaatgaagggtag |
31260287 |
T |
|
| Q |
221 |
actccttttgaatgttgtaat |
241 |
Q |
| |
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| T |
31260288 |
attccttctggatgttataat |
31260308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 31287923 - 31288043
Alignment:
| Q |
121 |
gtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtgg |
220 |
Q |
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|||||||||||||| || ||||| || || ||||||||||||||||| || ||||| || |||||||||||||| ||||||||||||| ||||||||| | |
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| T |
31287923 |
gtatctgaactctccacctccaaagtaatagtctttccagtcaaagtctttacaaaaatctgcattccacctcttaatctaagcaccagatgaagggtag |
31288022 |
T |
|
| Q |
221 |
actccttttgaatgttgtaat |
241 |
Q |
| |
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| T |
31288023 |
attccttctggatgttataat |
31288043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 31260449 - 31260536
Alignment:
| Q |
154 |
tttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtggactccttttgaatgttgtaat |
241 |
Q |
| |
|
|||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || ||||| || ||||| |||| |
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| T |
31260449 |
tttccagtcaaagtctttacgaatatctgcattccacctctcaatctaagcaccaaatgaagggtagattccttctggatgttataat |
31260536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 31288178 - 31288271
Alignment:
| Q |
148 |
attgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtggactccttttgaatgttgtaat |
241 |
Q |
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||||| ||||| ||||| || ||||||||||| ||||| ||||||||||||| ||||| | ||||||||||| |||||||| |||||||||| |
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| T |
31288178 |
attgtttttccggtcaatgtcttcacaaatatctgcatgccacctctcaatcgcagcacaaggtgaagggtggattccttttggatgttgtaat |
31288271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 31287779 - 31287815
Alignment:
| Q |
205 |
accaaatgaagggtggactccttttgaatgttgtaat |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31287779 |
accaaatgaagggtggactccttttgaatgttgtaat |
31287815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 31293123 - 31293163
Alignment:
| Q |
178 |
atttgcattccacctctcaatctaagcaccaaatgaagggt |
218 |
Q |
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| T |
31293123 |
atttgcattccacgtctcaatctaagcactaaatgaagggt |
31293163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 24039295 - 24039256
Alignment:
| Q |
202 |
agcaccaaatgaagggtggactccttttgaatgttgtaat |
241 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||| |
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| T |
24039295 |
agcaccaaatggagggtggactccttttggatgttgtaat |
24039256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 24039828 - 24039725
Alignment:
| Q |
124 |
tctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtggact |
223 |
Q |
| |
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|||||||| || || |||||||| || |||||||| |||||||| |||||||| || ||||| || || ||||| | ||| || | |||||||||||| | |
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| T |
24039828 |
tctgaactttccacctccaatgtaatggtctttcctgtcaaagtcttcacaaagatctgcatacctcccctcaaacgaagaacaagatgaagggtggatt |
24039729 |
T |
|
| Q |
224 |
cctt |
227 |
Q |
| |
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|||| |
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|
| T |
24039728 |
cctt |
24039725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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