View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3124_low_1 (Length: 611)
Name: NF3124_low_1
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3124_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 19 - 598
Target Start/End: Original strand, 32410361 - 32410940
Alignment:
| Q |
19 |
gcaagtgagtgggtatccgggagtgaggttttcaagttggcttccttccctgactaatattattcaaatcaacctctaccgtctttccaattgtcaacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32410361 |
gcaagtgagtgggtatccgggagtgaggttttcaagttggcttccttccctgactaatattattcaaatcaacctctaccgtctttccaattgtcaacat |
32410460 |
T |
|
| Q |
119 |
ctccatccattggaaggacttccatggctgaagaggattcacattagtgaaatgaatgaactaaagtacattcattacgatgatatctctcatgtgttct |
218 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32410461 |
ctccaaccattggaaggacttccacggctgaagaggattcacattagtgaaatgaatgaactaaagtacattcattacgatgatatctctcatgtgttct |
32410560 |
T |
|
| Q |
219 |
tcccgtctttggagaaactcatcctctttggctgcaaaaacctgaaaggatggaaaaggttgggaaataatgttgaaaaccatcatccactccccccttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32410561 |
tcccgtctttggagaaactcatcctctttggctgcaaaaacctgaaaggatggaaaaggttgggaaataatgttgaaaaccatcatccactccccccttt |
32410660 |
T |
|
| Q |
319 |
tccctgtctttcatatttggaaatttgggattgtccgaaactgacttgcatgcctacatatccttacctcaccgagttgaagttaatttcttgtaacgtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32410661 |
tccctgtctttcatatttggaaatttgggattgtccgaaactgacttgcatgcctacatatccttacctcaccgagttgaagttaatttcttgtaacgtg |
32410760 |
T |
|
| Q |
419 |
aagccaatgattgaaacatgttcggttcagcttcagtcttcctccttcaaccctctttttggcctcaagcacttgtatctcacagaaatagacctagaag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32410761 |
aagccaatgattgaaacatgttcggttcagcttcagtcttcctccttcaaccctctttttggcctcaagcacttgtatctcacagaaatagacctagaag |
32410860 |
T |
|
| Q |
519 |
caatgccagagcagtggatgaaaaatctgaaatctcttgagcgtctctctctttcgggatttcttgttattgagcctatg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32410861 |
caatgccagagcagtggatgaaaaatctgaaatctcttgagcgtctctctctttcgggatttcttgttattgagcctatg |
32410940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University