View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3124_low_10 (Length: 232)

Name: NF3124_low_10
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3124_low_10
NF3124_low_10
[»] chr7 (1 HSPs)
chr7 (1-232)||(49110056-49110287)
[»] chr8 (9 HSPs)
chr8 (1-225)||(28711839-28712063)
chr8 (1-225)||(28719186-28719410)
chr8 (1-222)||(28726831-28727052)
chr8 (1-222)||(28625926-28626147)
chr8 (66-222)||(28636686-28636842)
chr8 (98-222)||(28700940-28701064)
chr8 (98-222)||(28740470-28740594)
chr8 (170-225)||(28644417-28644472)
chr8 (144-222)||(28731531-28731609)
[»] scaffold0591 (1 HSPs)
scaffold0591 (1-222)||(5137-5358)
[»] chr6 (1 HSPs)
chr6 (191-231)||(29645910-29645950)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49110287 - 49110056
Alignment:
Q  1 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49110287 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 49110188  T
Q  101 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49110187 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 49110088  T
Q  201 atcgcattcttgctcttcttgcctctcactct 232  Q
    ||||||||||||||||||||||||||||||||    
T  49110087 atcgcattcttgctcttcttgcctctcactct 49110056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28712063 - 28711839
Alignment:
Q  1 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 100  Q
    |||||||||||||||||||||||| |||||||  ||| | |||||  | |  || || || ||  |||||||||| || ||||| | ||| || || |||    
T  28712063 acaagaattagaagatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatggcactccattctgcaactgagcttggtgta 28711964  T
Q  101 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 200  Q
    ||||| || || ||||||||||| | || | |||  || ||  |||||||||| || || ||||| ||||||| |||||  ||||| || |||||||| |    
T  28711963 tttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtctttcctgcaacaatcttgatgctcccaaaatgttgg 28711864  T
Q  201 atcgcattcttgctcttcttgcctc 225  Q
    |||||||||||||| ||||||||||    
T  28711863 atcgcattcttgctgttcttgcctc 28711839  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28719410 - 28719186
Alignment:
Q  1 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 100  Q
    |||||||||||||||||||||||| |||||||  ||| | |||||  | |  || || || ||  |||||||||| || ||||| | ||| || || |||    
T  28719410 acaagaattagaagatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatggcactccattctgcaactgagcttggtgta 28719311  T
Q  101 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 200  Q
    ||||| || || ||||||||||| | || | |||  || ||  |||||||||| || || ||||| ||||||| |||||  ||||| || |||||||| |    
T  28719310 tttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtctttcctgcaacaatcttgatgctcccaaaatgttgg 28719211  T
Q  201 atcgcattcttgctcttcttgcctc 225  Q
    |||||||||||||| ||||||||||    
T  28719210 atcgcattcttgctgttcttgcctc 28719186  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28727052 - 28726831
Alignment:
Q  1 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 100  Q
    |||||||||||||||||||||||| |||||||  ||| | |||||  | |  || || || ||  |||||||||| || ||||| | ||| || || |||    
T  28727052 acaagaattagaagatgaagaaagtttctcatttgctatacaactttgcagttctatggtgctaccaatggcactccattctgcaactgagcttggtgta 28726953  T
Q  101 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 200  Q
    ||||| || || ||||||||||| | || | |||  || ||  |||||||||| || || ||||| ||||||| |||||  ||||| || |||||||| |    
T  28726952 tttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtctttcctgcaacaatcttgatgctcccaaaatgttgg 28726853  T
Q  201 atcgcattcttgctcttcttgc 222  Q
    |||||||||||| |||||||||    
T  28726852 atcgcattcttgttcttcttgc 28726831  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28626147 - 28625926
Alignment:
Q  1 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 100  Q
    |||||||||||||||||||||||| |||||||| ||| | || ||  ||| ||| || || ||  | |||| ||| || ||||| | | | || || |||    
T  28626147 acaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgta 28626048  T
Q  101 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 200  Q
    ||||| || || ||||||||||||| || | |||  || ||  |||||||||| || || ||| | || |||| |||||| ||||| || |||||||| |    
T  28626047 tttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgttgg 28625948  T
Q  201 atcgcattcttgctcttcttgc 222  Q
    |||||||||||| |||||||||    
T  28625947 atcgcattcttgttcttcttgc 28625926  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 28636842 - 28636686
Alignment:
Q  66 caatggcacttcaatctgctattgaactcggcgtatttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtct 165  Q
    |||||||||| |||||||| | ||| || || || ||||| || || ||||||||||| | |||| |||  || ||  |||||||||| || || ||| |    
T  28636842 caatggcactacaatctgcaactgagcttggtgtttttgatgttttgcaaaaagctggaaaagatgctcaactctctgccgatgagattgcgtcgcgtat 28636743  T
Q  166 ctcctgcaccaatccagatgcacctaaaatgttagatcgcattcttgctcttcttgc 222  Q
     || |||| |||||| ||||| || |||||||| |||||||| ||||||||||||||    
T  28636742 ttcttgcagcaatcctgatgccccgaaaatgttggatcgcatccttgctcttcttgc 28636686  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 28701064 - 28700940
Alignment:
Q  98 gtatttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgt 197  Q
    |||||||| || || ||||||||||||| || | |||  || ||  |||||||||| || || ||| | || |||| |||||| ||||| || |||||||    
T  28701064 gtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgt 28700965  T
Q  198 tagatcgcattcttgctcttcttgc 222  Q
    | |||||||||||||||||||||||    
T  28700964 tggatcgcattcttgctcttcttgc 28700940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 28740594 - 28740470
Alignment:
Q  98 gtatttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgt 197  Q
    |||||||| || || ||||||||||||| |||| |||  || ||  || ||||||| || || ||| | || |||| |||||| ||||| || |||||||    
T  28740594 gtatttgatgtgttgcaaaaagctggtaaagatgctcaactctctgcccatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgt 28740495  T
Q  198 tagatcgcattcttgctcttcttgc 222  Q
    | |||||||||||||||||||||||    
T  28740494 tggatcgcattcttgctcttcttgc 28740470  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 28644472 - 28644417
Alignment:
Q  170 tgcaccaatccagatgcacctaaaatgttagatcgcattcttgctcttcttgcctc 225  Q
    |||| |||||| ||||| || |||||||| ||||||||||||||| ||||||||||    
T  28644472 tgcagcaatcctgatgctcccaaaatgttggatcgcattcttgctgttcttgcctc 28644417  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 28731609 - 28731531
Alignment:
Q  144 ccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttagatcgcattcttgctcttcttgc 222  Q
    |||||||||| || || ||| | || |||| |||||| ||||| || |||||||| ||||||||||||| |||||||||    
T  28731609 ccgatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgttggatcgcattcttgttcttcttgc 28731531  T

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Target: scaffold0591 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5137 - 5358
Alignment:
Q  1 acaagaattagaagatgaagaaagcttctcatacgctgttcaactcagtaactcaattgttctttcaatggcacttcaatctgctattgaactcggcgta 100  Q
    |||||||||||||||||||||||| |||||||| ||| | || ||  ||| ||| || || ||  | |||| ||| || ||||| | | | || || |||    
T  5137 acaagaattagaagatgaagaaagtttctcatatgctatacagcttggtagctctatggtgctaccgatggtactccattctgcaagtcagcttggtgta 5236  T
Q  101 tttgaagtcttacaaaaagctggtagagatactcctctttcatccgatgagatcgcttcacgtctctcctgcaccaatccagatgcacctaaaatgttag 200  Q
    ||||| || || ||||||||||||| || | |||  || ||  |||||||||| || || ||| | || |||| |||||| ||||| || |||||||| |    
T  5237 tttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaatcctgatgctcccaaaatgttgg 5336  T
Q  201 atcgcattcttgctcttcttgc 222  Q
    ||||||||||||||||||||||    
T  5337 atcgcattcttgctcttcttgc 5358  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 29645910 - 29645950
Alignment:
Q  191 aaaatgttagatcgcattcttgctcttcttgcctctcactc 231  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  29645910 aaaatgttggatcgcattcttgctcttcttgcctctcactc 29645950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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