View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3124_low_2 (Length: 528)
Name: NF3124_low_2
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3124_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 34 - 518
Target Start/End: Original strand, 37134606 - 37135111
Alignment:
| Q |
34 |
tttggattgaaattttatatcatatagattatctctataaatatatgatttgtgtctaaagcctttttatgatcttgttcacaattacaatatctcaaaa |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37134606 |
tttggattgaaattttatatcatatagattatctctataaatatatgatttgtgtctaaagcctttttatgatcttgttcacaattacaatatctcaaaa |
37134705 |
T |
|
| Q |
134 |
aatattgacactgtaaataaatgaattgaaaaaatttaagttattgcagttttaaaatgaacaatgctatttatctagataaattttgtagcgaaaatga |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37134706 |
aatattgacactgtaagtaaatgaattgaaaaaatttaagttattacagttttaaaatgagcaatgctatttatctagataaattttgtagcgaaaatga |
37134805 |
T |
|
| Q |
234 |
attgtccaataaaatagttttctgccacaaatcaaagaggtggtgagacataatttaaggaaaa-tccttttaaaattt--------------------a |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
37134806 |
attgtccaataaaatagttttctgccacaaatcaaagaggtggtgagacataatttaaggaaaattccttttaaaatttataaagttgtttaaaaattaa |
37134905 |
T |
|
| Q |
313 |
aagattaaaattaaattgatggtttgaagctagctagaaactagattaatgttatatacatatacatagggtggaaagcaagctcaatgtagttgtcatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37134906 |
aagattaaaattaaattgatggtttgaagctagctagaaactagattaatgttatatacatatacatagggtggaaagcaagttcaatgtagttgtcatt |
37135005 |
T |
|
| Q |
413 |
ctctaacaagttaaccaaatatttgtttacaaacgtactaaaattaccgtnnnnnnntggtagaccattcatagcaatattgtagttgaatcataggtta |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37135006 |
ctctaacaagttaaccaaatatttgtttacaaacgtactaaaattaccgtaaaaaaatggtagaccattcatagcaatattgtagttgaatcataggtta |
37135105 |
T |
|
| Q |
513 |
gtataa |
518 |
Q |
| |
|
|||||| |
|
|
| T |
37135106 |
gtataa |
37135111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 13055225 - 13055264
Alignment:
| Q |
35 |
ttggattgaaattttatatcatatagattatctctataaa |
74 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13055225 |
ttggattgaaattttatattatatagatcatctctataaa |
13055264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 11207318 - 11207241
Alignment:
| Q |
222 |
tagcgaaaatgaattgtccaataaaatagttttctg-ccacaaatcaaagaggtggtgagacataatttaaggaaaat |
298 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| ||| ||||||||||| | ||||||| | ||||||||||||||||| |
|
|
| T |
11207318 |
tagcgaaaattaagtgtccaataaaattgtttcctggccacaaatcaagggggtggtggggcataatttaaggaaaat |
11207241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University