View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3124_low_5 (Length: 389)
Name: NF3124_low_5
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3124_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 35374832 - 35374478
Alignment:
| Q |
18 |
cattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35374832 |
cattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattctt |
35374733 |
T |
|
| Q |
118 |
cgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35374732 |
cgtttgcatacttagcagtgtagacagagaaggggatggtgtttctgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaata |
35374633 |
T |
|
| Q |
218 |
gtgacatgaggtattcgtatcttcgtgccttatcagcattgtttgaaggcgagttagaatccagtggataagtagtacgagaaacagcagaaccaatatt |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35374632 |
gtgacgtgaggtattcgtatcttcgtgccttatcagcattgtttgaaggctagttagaatccagtggataagtagtacgagaaacagcagaaccaatatt |
35374533 |
T |
|
| Q |
318 |
atgatggggaagaagtttgaagaaaatagggagtgatggtgatggtgatggtgat |
372 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35374532 |
atgatggggaagaagtgtgaagaaaatagggagtgatggtgatggtgatagtgat |
35374478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 35381081 - 35380949
Alignment:
| Q |
23 |
gagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgttt |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||| || |||||| || |||||||||||| |||| |||||||||||||||||||||| || ||||||| | | |
|
|
| T |
35381081 |
gagatggaaactctgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgt |
35380982 |
T |
|
| Q |
123 |
gcatacttagcagtgtagacagagaaggggatg |
155 |
Q |
| |
|
||||| ||||| ||||||| ||| || ||||| |
|
|
| T |
35380981 |
gcatatttagcgttgtagacggaggagaggatg |
35380949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 35351735 - 35351663
Alignment:
| Q |
22 |
cgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaat |
94 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || | ||||| || ||||| |||||| ||| |||||||||| |
|
|
| T |
35351735 |
cgagatggaaaatgtgggaacaaagagggagggtgcgaatgtaatcattgttttcaaattcaaccaagcaaat |
35351663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 35356869 - 35356797
Alignment:
| Q |
22 |
cgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaat |
94 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || | ||||| || ||||| |||||| ||| |||||||||| |
|
|
| T |
35356869 |
cgagatggaaagtgtgggaacaaagagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaat |
35356797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 30811986 - 30811863
Alignment:
| Q |
90 |
caaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgtggacga |
189 |
Q |
| |
|
||||||||||| | |||| | || |||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
30811986 |
caaataacacagtaacgtgcaaatgcttcttttgcatacttagcggtgtagatggagaaggagatggtatttatgaccaactcgtctaagttatgaacga |
30811887 |
T |
|
| Q |
190 |
catgtgtttgcaattggtcgttag |
213 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30811886 |
catgtgtttgcagttggtcgttag |
30811863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University