View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3124_low_6 (Length: 381)
Name: NF3124_low_6
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3124_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 48153401 - 48153765
Alignment:
| Q |
18 |
atccacaacagctttcaccttagtttctaccttgttgtcaaccatagtctcaagaaaggctacttgagtcctaataaaatcaaagacgggttcaattggt |
117 |
Q |
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| T |
48153401 |
atccacaacagctttcaccttagtttctaccttgttgtcaaccatagtctcaagagaggctacttgagtcctaataaaatcaaagacgggttcaattggt |
48153500 |
T |
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| Q |
118 |
ggtagaggtgtatcatagcgcctacgaacacgaccacgcccaccacggccccttccaccagcaaggtgagcttgatcggcttctggatgttgcggatatg |
217 |
Q |
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| T |
48153501 |
ggtagaggtgtatcatagcgcctacgaacacgaccacgcccaccacggccccttccaccagcaaggtgagcttgatcggcttctggatgttgcggatatg |
48153600 |
T |
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| Q |
218 |
gtccctcaaccacaggcataagaacatgaccacgcccatgc---------ccacggccccttcggccagcaaggtgagcttgatcagcttctgccacatg |
308 |
Q |
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| T |
48153601 |
gtccctcaaccacaggcataagaacatgaccacgcccatgcccacggccaccacggccccttcggccagcaaggtgagcttgatcagcttctgccacatg |
48153700 |
T |
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| Q |
309 |
cattggagcagttcgatatccacttcataataaagagaaacttcagacataatgtacagaataat |
373 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48153701 |
cattggagcagttcgatatccacttcataacaaagagaaacttcagacataatgtacagaataat |
48153765 |
T |
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