View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3124_low_7 (Length: 283)
Name: NF3124_low_7
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3124_low_7 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4203136 - 4202961
Alignment:
| Q |
1 |
tgtatggttctgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggtta |
100 |
Q |
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| T |
4203136 |
tgtatggttctgagtatagagtgtgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggtta |
4203037 |
T |
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| Q |
101 |
tgattgtagtactcatttgaagagtacttggattccttcgacacgtcgtcgagaacgggaggtggagatgtttgcc |
176 |
Q |
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| T |
4203036 |
tgattgtagtactcatttgaagagtacttggattccttcgacacgtcgtcgagaacgggaggtggagatgtttgcc |
4202961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 4202944 - 4202883
Alignment:
| Q |
205 |
agggttgttctggtgttaagagacaaaaaggtttattagggtcatcccaaaatgctgctgct |
266 |
Q |
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| T |
4202944 |
agggttgttctggtgttaagagacaaaaaggtttattagggtcatcacaaaatgctgctgct |
4202883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 17082 - 16960
Alignment:
| Q |
11 |
tgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagt |
110 |
Q |
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| T |
17082 |
tgagtttagggtttgtcaagattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagt |
16983 |
T |
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| Q |
111 |
actcatttgaagagtacttggat |
133 |
Q |
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| T |
16982 |
actcacgtgaagagcacgtggat |
16960 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 14512731 - 14512853
Alignment:
| Q |
11 |
tgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagt |
110 |
Q |
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| T |
14512731 |
tgagtttagggtttgtcaagattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagt |
14512830 |
T |
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| Q |
111 |
actcatttgaagagtacttggat |
133 |
Q |
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| T |
14512831 |
actcacgtgaagagcacgtggat |
14512853 |
T |
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