View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3124_low_8 (Length: 256)

Name: NF3124_low_8
Description: NF3124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3124_low_8
NF3124_low_8
[»] chr4 (9 HSPs)
chr4 (11-241)||(31306050-31306280)
chr4 (121-241)||(31306388-31306508)
chr4 (105-241)||(31249463-31249600)
chr4 (121-241)||(31260188-31260308)
chr4 (121-241)||(31287923-31288043)
chr4 (154-241)||(31260449-31260536)
chr4 (148-241)||(31288178-31288271)
chr4 (205-241)||(31287779-31287815)
chr4 (178-218)||(31293123-31293163)
[»] chr6 (2 HSPs)
chr6 (202-241)||(24039256-24039295)
chr6 (124-227)||(24039725-24039828)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 31306050 - 31306280
Alignment:
Q  11 aatgagctaaagtataaccatctttaagctgctttccagcaatcacaaccctcacttggtcaagtggaatacccactttctcctcaagacttagtttcac 110  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||    
T  31306050 aatgagctagagtataactatctttaagctgctttccagcaatcacaaccctcacttggtcaagtggaatacctactttctcctcgagagtgagtttcac 31306149  T
Q  111 atcagctattgtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31306150 atcagctattgtatctgaactctctacatccaatgttattgtctttcctgtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaa 31306249  T
Q  211 tgaagggtggactccttttgaatgttgtaat 241  Q
    |||||||||||||||||||||||||||||||    
T  31306250 tgaagggtggactccttttgaatgttgtaat 31306280  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 31306388 - 31306508
Alignment:
Q  121 gtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtgg 220  Q
    |||||||||||||| || ||||| || || ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |    
T  31306388 gtatctgaactctcaacctccaaagtaatagtctttccagtcaaagtcttaacaaatatctgcattccacctctcaatctaagcaccaaatgaagggtag 31306487  T
Q  221 actccttttgaatgttgtaat 241  Q
    | ||||| || ||||| ||||    
T  31306488 attccttctggatgttataat 31306508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 31249463 - 31249600
Alignment:
Q  105 tttcacatcagctattgtatctgaactctctacatccaatgttattgtc-tttccagtcaaagtattcacaaatatttgcattccacctctcaatctaag 203  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||  || ||||| ||||| || || ||||| ||||||||||||||| |||||| |||    
T  31249463 tttcacattacctattgtatcttaactctctacatccaatgttatgatcctttcctgtcaatgttttgacaaaaatttgcattccacctatcaatcgaag 31249562  T
Q  204 caccaaatgaagggtggactccttttgaatgttgtaat 241  Q
    |||||||||||| | ||| ||  |||||||||||||||    
T  31249563 caccaaatgaagtgcggattctgtttgaatgttgtaat 31249600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 31260188 - 31260308
Alignment:
Q  121 gtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtgg 220  Q
    |||||||||||||| || ||||| || || || |||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| |    
T  31260188 gtatctgaactctcaacctccaaagtaatagtttttccagttaaagtcttaacaaaaatttgcattccgcctctcaatctaagcaccaaatgaagggtag 31260287  T
Q  221 actccttttgaatgttgtaat 241  Q
    | ||||| || ||||| ||||    
T  31260288 attccttctggatgttataat 31260308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 31287923 - 31288043
Alignment:
Q  121 gtatctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtgg 220  Q
    |||||||||||||| || ||||| || || ||||||||||||||||| || ||||| || |||||||||||||| ||||||||||||| ||||||||| |    
T  31287923 gtatctgaactctccacctccaaagtaatagtctttccagtcaaagtctttacaaaaatctgcattccacctcttaatctaagcaccagatgaagggtag 31288022  T
Q  221 actccttttgaatgttgtaat 241  Q
    | ||||| || ||||| ||||    
T  31288023 attccttctggatgttataat 31288043  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 31260449 - 31260536
Alignment:
Q  154 tttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtggactccttttgaatgttgtaat 241  Q
    |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||    
T  31260449 tttccagtcaaagtctttacgaatatctgcattccacctctcaatctaagcaccaaatgaagggtagattccttctggatgttataat 31260536  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 31288178 - 31288271
Alignment:
Q  148 attgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtggactccttttgaatgttgtaat 241  Q
    ||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||  ||||| |  ||||||||||| |||||||| ||||||||||    
T  31288178 attgtttttccggtcaatgtcttcacaaatatctgcatgccacctctcaatcgcagcacaaggtgaagggtggattccttttggatgttgtaat 31288271  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 31287779 - 31287815
Alignment:
Q  205 accaaatgaagggtggactccttttgaatgttgtaat 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  31287779 accaaatgaagggtggactccttttgaatgttgtaat 31287815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 31293123 - 31293163
Alignment:
Q  178 atttgcattccacctctcaatctaagcaccaaatgaagggt 218  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  31293123 atttgcattccacgtctcaatctaagcactaaatgaagggt 31293163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 24039295 - 24039256
Alignment:
Q  202 agcaccaaatgaagggtggactccttttgaatgttgtaat 241  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  24039295 agcaccaaatggagggtggactccttttggatgttgtaat 24039256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 24039828 - 24039725
Alignment:
Q  124 tctgaactctctacatccaatgttattgtctttccagtcaaagtattcacaaatatttgcattccacctctcaatctaagcaccaaatgaagggtggact 223  Q
    |||||||| || || |||||||| || |||||||| |||||||| |||||||| || ||||| || || ||||| | ||| || | |||||||||||| |    
T  24039828 tctgaactttccacctccaatgtaatggtctttcctgtcaaagtcttcacaaagatctgcatacctcccctcaaacgaagaacaagatgaagggtggatt 24039729  T
Q  224 cctt 227  Q
    ||||    
T  24039728 cctt 24039725  T

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