View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3125A-Insertion-1 (Length: 859)
Name: NF3125A-Insertion-1
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 103; Significance: 8e-51; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 4745362 - 4745252
Alignment:
| Q |
8 |
attatccttaagaaatagagaaa-ttctgaacatctcatctcaattttgaacaagtgacttaaaagactaactcatagaaatataggagaaatgtatcaa |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745362 |
attatccttaagaaatagagaaaattctgaacatctcatctcaattttgaacaagtgacttaaaagactaactcatagaaatataggagaaatgtatcaa |
4745263 |
T |
|
| Q |
107 |
ctccactgcaa |
117 |
Q |
| |
|
||||||||||| |
|
|
| T |
4745262 |
ctccactgcaa |
4745252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 420 - 605
Target Start/End: Original strand, 6327251 - 6327437
Alignment:
| Q |
420 |
ctcctccaattgttgagcaagggaaagaacagttttggaccgccccaattgaataagggaagataaaatgaagttataatgggctatgagatagacacct |
519 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| || |||||||||| ||| ||||||||||| ||||||||||||| |||| ||||| |||| |
|
|
| T |
6327251 |
ctcctccaattgttgagcaagggaaacaacagtttcggagcggcccaattgaagaagtgaagataaaataaagttataatgggatatgggatagcaacct |
6327350 |
T |
|
| Q |
520 |
tgagagagcgtggattcaaacaaatgaactgcagttggcc-actcttgcatgattctataaaaacattgctaggaacataatcacac |
605 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
6327351 |
acagagagcgtggattcaaacaaactaacagcagttggccaactcttgcatgattctataaaaatagggctaggaacataatcacac |
6327437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 24620999 - 24621122
Alignment:
| Q |
84 |
gaaatataggagaaatgtatcaactccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtcacaaaccaagacaatcataggcata |
183 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||| || |
|
|
| T |
24620999 |
gaaatatatgagaaacgtatcaactccattgcaaactagaatgctaaaattgattcaggctttcaagaaaatgtcacaagccaagacaatcaaaggcgta |
24621098 |
T |
|
| Q |
184 |
tatatataatcaaagagaataaaa |
207 |
Q |
| |
|
| | ||||||||||||| |||||| |
|
|
| T |
24621099 |
tttttataatcaaagagcataaaa |
24621122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 47569972 - 47569849
Alignment:
| Q |
84 |
gaaatataggagaaatgtatcaactccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtcacaaaccaagacaatcataggcata |
183 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| || | ||||||||||||||||||||| |||| ||||||||||||||||| || |
|
|
| T |
47569972 |
gaaatataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaagccaagacaatcataggcgta |
47569873 |
T |
|
| Q |
184 |
tatatataatcaaagagaataaaa |
207 |
Q |
| |
|
| ||||||||||||||| |||||| |
|
|
| T |
47569872 |
tttatataatcaaagagcataaaa |
47569849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 21158276 - 21158446
Alignment:
| Q |
11 |
atccttaagaaatagagaaa-ttctgaacatctcatctcaattttgaacaagtgacttaaaagactaac-----tcatagaaatataggagaaatgtatc |
104 |
Q |
| |
|
||||| ||||||| |||||| || |||| ||| ||||||| |||||| ||||| |||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
21158276 |
atcctgaagaaattgagaaaattatgaagatcccatctcagttttgagtaagtggcttaaaagactaacatgtctcattgaaatataggagaaatgtatc |
21158375 |
T |
|
| Q |
105 |
aactccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtcacaaaccaagacaatcat |
176 |
Q |
| |
|
||||||| |||||| | ||||||| ||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
21158376 |
aactccatcgcaaacgacaatgctataattgattcaggctttcaagaaaatgtcac-aagcaagacaatcat |
21158446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 28232405 - 28232285
Alignment:
| Q |
89 |
ataggagaaatgtatcaactccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtcacaaaccaagacaatcataggcatatatat |
188 |
Q |
| |
|
|||||||||| | ||||||||| |||| |||| ||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
28232405 |
ataggagaaacatgtcaactccattgcagactacaatgctataactgattcaggctttcaagaaaatgtcacaaggagagacaa-cataggcatatttat |
28232307 |
T |
|
| Q |
189 |
ataatcaaagagaataaaacaa |
210 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
28232306 |
ataatcaaagagcataaaacaa |
28232285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 28240040 - 28239925
Alignment:
| Q |
88 |
tataggagaaatgtatcaactccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtcacaaaccaagacaatcataggcatatata |
187 |
Q |
| |
|
|||||||||||||||| | ||| | |||| |||| ||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
28240040 |
tataggagaaatgtataagctc-attgcagactacaatgctataattgattcagactttcaagaaaatgtcacaa------acaatcataggcatattta |
28239948 |
T |
|
| Q |
188 |
tataatcaaagagaataaaacaa |
210 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
28239947 |
tataatcaaagagcataaaacaa |
28239925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 28238808 - 28238726
Alignment:
| Q |
301 |
tgatggccggagtcgatgatattatgtaacagagagatagctgaagacatgttaccattgacacagtgacacttgatgaggat |
383 |
Q |
| |
|
||||| |||| ||||||||| ||||| || |||||||||||||||||||||||||||| |||| | ||||| ||||||||||| |
|
|
| T |
28238808 |
tgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggat |
28238726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 404
Target Start/End: Original strand, 6327051 - 6327214
Alignment:
| Q |
241 |
tgaatctcgcctatgcgtctaaaaccatgtaaaatatcattaaaagtttcagtacaaggttgatggccggagtcgatgatattatgtaacagagagatag |
340 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||||||||| |||||||||| | |||| |||| || | | |||||||||| || | | |||||| |
|
|
| T |
6327051 |
tgaatcttgcctatgcggcaaaaaccatcgaaaatatcatacaaagtttcagaagaaggaggatgaccagtttttatgatattattgaataaacagatag |
6327150 |
T |
|
| Q |
341 |
ctgaagacatgttaccattgacacagtgacacttgatgaggattttccaggtatgaatgtctgg |
404 |
Q |
| |
|
| |||||||||||||||| || ||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
6327151 |
ccgaagacatgttaccatggaaacagtgacatgtgatgaggattgaccaagtatgaatgtctgg |
6327214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 28327164 - 28327085
Alignment:
| Q |
85 |
aaatataggagaaatgtatca-----actccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtca |
159 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| | ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28327164 |
aaatataggagaaatgtatcatatcaactccattgcaaacaacaatgctagaattgattcaggctttcaagaaaatgtca |
28327085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 412
Target Start/End: Original strand, 12535843 - 12535939
Alignment:
| Q |
316 |
atgatattatgtaacagagagatagctgaagacatgttaccattgacacagtgacacttgatgaggattttccaggtatgaatgtctgggaaaacat |
412 |
Q |
| |
|
|||||||| || || ||| ||| ||| || |||||||||||| || |||| ||||| | ||||||||||||||| |||| || || ||||||||||| |
|
|
| T |
12535843 |
atgatattgtggaatagacagaaagccgaggacatgttaccagtggcacaatgacagtcgatgaggattttccaagtatcaacgtttgggaaaacat |
12535939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 1637786 - 1637686
Alignment:
| Q |
78 |
ctcatagaaatataggagaaatgtatca---actccactgcaaactagaatgctacaatggattcaggctttcaagaaaatgtcacaaaccaagacaatc |
174 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| ||||||| | ||| || ||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
1637786 |
ctcattgaaatataggagaaatgtatcatcaactccattgcaaacaacaattatataattgattcaggctttcaagaaaatgtcac-aagcaagacaatc |
1637688 |
T |
|
| Q |
175 |
at |
176 |
Q |
| |
|
|| |
|
|
| T |
1637687 |
at |
1637686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 1717571 - 1717526
Alignment:
| Q |
365 |
agtgacacttgatgaggattttccaggtatgaatgtctgggaaaac |
410 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
1717571 |
agtgacaagtgatgaggattttccaagtatcaatgtctgggaaaac |
1717526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University