View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-10 (Length: 677)
Name: NF3125A-Insertion-10
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 16370223 - 16369806
Alignment:
| Q |
8 |
tttcatataacttaaaaggactccatagatagcctctctagtaaaacatttcaaattcaaagtgatggctacaaatgacttaaagcttttgggtggttgg |
107 |
Q |
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| T |
16370223 |
tttcatataacttaaaaggactccatagatagcctctctaggaaaacatttcaaattcaaagtgatggctacaaatgacttaaagcttttgggtggttgg |
16370124 |
T |
|
| Q |
108 |
ttcagtccatttgcagtgagggcacaaattgccctttccattaaaggtttggattatgagaacattgtagaaaacttgaattccaaaagtgatttgtttc |
207 |
Q |
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| T |
16370123 |
ttcagtccatttgcagtgagggcacaaattgccctttccatcaaaggtttggattatgagaacattgtagaaaacttgaattccaaaagtgatttgtttc |
16370024 |
T |
|
| Q |
208 |
ttcagtccaatcctgtatacnnnnnnntcccagttctcattcatggagataaagccatttgtgaatcagcaataatagttgaatatattgatgaagtttg |
307 |
Q |
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| T |
16370023 |
ttcagtccaatcctgtatacaaaaaaatcccagttctcattcatggagataaagccatttgtgaatcagcaataatagttgaatatattgatgaagtttg |
16369924 |
T |
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| Q |
308 |
gaaaaataatgatactccctcaattcttccttcaaatgcttatgatcgagccagtgctagattttggggtgcctacatagatgacaaggtattaatttat |
407 |
Q |
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| T |
16369923 |
gaaaaataatggcactccctcaattcttccttcaaatgcttatgatcgagccagtgctagattttggggtgcctacatagatgacaaggtattaatttat |
16369824 |
T |
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| Q |
408 |
attccttattcattttaa |
425 |
Q |
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| T |
16369823 |
attccttattcattttaa |
16369806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 155 - 414
Target Start/End: Complemental strand, 16374212 - 16373952
Alignment:
| Q |
155 |
tttggattatgagaacattgtagaaaacttgaattccaaaagtgatttgtttcttcagtccaatcctgtatacnnnnnnntcccagttctcattcatgga |
254 |
Q |
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| T |
16374212 |
tttggactatgagaacattgtagaaaccatgaattccaaaagtgatttgtttcttcagtccaatcctgtatt-aaaaaaatcccagttctcattcatgga |
16374114 |
T |
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| Q |
255 |
gataaagccatttgtgaatcagcaa-taatagttgaatatattgatgaagtttggaaaaataatgatactccctcaattcttccttcaaatgcttatgat |
353 |
Q |
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| T |
16374113 |
gataaagccatttgtgaatcagcaaataatagttgaatatattgatgaagtttggaaaaataatggtactccctcaattcttccttcaaatgcttatgac |
16374014 |
T |
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| Q |
354 |
cgagccagtgctagattttggg-gtgcctacatagatgacaaggtattaatttatattcctt |
414 |
Q |
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| T |
16374013 |
cgagccattgcgaaattttgggtttgcctacatcgatgacaaggtattaatttatattcctt |
16373952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 569 - 674
Target Start/End: Complemental strand, 16369664 - 16369561
Alignment:
| Q |
569 |
tatagaaattggtctttcactcatattgaaagggaataaaatcaattattctagacggtacaaggatcttctaatataattaaagttttgcacgaaccag |
668 |
Q |
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| T |
16369664 |
tatagaaattggtctttcactcatattgaaagg-aataaaatcaattattgtagacggtacaaggatcttctaatataattaaag-tttgcacgaaccag |
16369567 |
T |
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| Q |
669 |
aacata |
674 |
Q |
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|||||| |
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| T |
16369566 |
aacata |
16369561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 20605753 - 20605687
Alignment:
| Q |
309 |
aaaaataatgatactccctcaattcttccttcaaatgcttatgatcgagccagtgctagattttggg |
375 |
Q |
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| T |
20605753 |
aaaaataatggtactccttttatccttccttcaaatgcttatgaccgagccagtgctagattttggg |
20605687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 20605849 - 20605756
Alignment:
| Q |
177 |
gaaaacttgaattccaaaagtgatttgtttcttcagt--ccaatcctgtatacnnnnnnntcccagttctcattcatggagataaagccatttg |
268 |
Q |
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| T |
20605849 |
gaaaacttgaattccaaaagtgatttattttttcagtacccagccttgtattcaaaaaaatcccagttctcattcatggagataaagccatttg |
20605756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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