View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-11 (Length: 500)
Name: NF3125A-Insertion-11
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 18000255 - 17999961
Alignment:
| Q |
7 |
acttcaagatacattattgttgttgaatcttctacttaaaaagttgggaactcaatctcagatccacatttgccatgggggaacacaggacagtcaatga |
106 |
Q |
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| T |
18000255 |
acttcaagatacattattgttgttgaatcttctacttaaaaagttgggaactcaatctcagatccacatttgccatgggggaacacaggacagtcaatga |
18000156 |
T |
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| Q |
107 |
agtttgatccagaagtgtccacacacaaataaacttgatatagttgactgttgccagatgagtccacattacattcaatgaatggagaaaatccaactgc |
206 |
Q |
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| T |
18000155 |
agtttgatccagaagtgtccacacacaaataaacttgatatagttgactgttgccagatgagtccacattacattcaatgaatggagcaaacccaactgc |
18000056 |
T |
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| Q |
207 |
attttgtatagctcctttgatgttgctcaagctgtaggaatttccatcaggttgyactcctgtcacaaaatcaatattttcttagtaatttggtt |
301 |
Q |
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| T |
18000055 |
attttgtatagctcctttgatgctgctcaagctgtacgaatttccatcaggttgtactcctgtcacaaaatcaatcttttcttagtaatttggtt |
17999961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 355 - 500
Target Start/End: Complemental strand, 17999803 - 17999659
Alignment:
| Q |
355 |
atgtatggatcttagatatttacctgcacttgtaagagcttgaaggaggttggctttttgtctcaaattgagagttgtttcaaaataatcatgttgctta |
454 |
Q |
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| T |
17999803 |
atgtatggatcttagatatt-acctgcacttgtaagagcttgaaggaggtttgctttttgtctcaagttgagagttgtttcaaaataatcatgttgctta |
17999705 |
T |
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| Q |
455 |
agaactgattctgagcaagtaccatgtttctcccattcatgtgtcc |
500 |
Q |
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| T |
17999704 |
agaactgattctgaacaagtaccatgtttctcccattcatgtgtcc |
17999659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 366 - 500
Target Start/End: Complemental strand, 18006921 - 18006787
Alignment:
| Q |
366 |
ttagatatttacctgcacttgtaagagcttgaaggaggttggctttttgtctcaaattgagagttgtttcaaaataatcatgttgcttaagaactgattc |
465 |
Q |
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| T |
18006921 |
ttagatatttacctgcacttgtaagagcttggaggaggttggctttttgtctcaaattgagagttgtttcaaaatagtcatgttgacttagcactgattc |
18006822 |
T |
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| Q |
466 |
tgagcaagtaccatgtttctcccattcatgtgtcc |
500 |
Q |
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| T |
18006821 |
agagcaagtaccatgtttctcccattcatgggtcc |
18006787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 18007253 - 18007016
Alignment:
| Q |
40 |
acttaaaaagttgggaactcaatctcagatccacat---ttgccatgggggaacacaggacagtcaatgaagtttgatccagaagtgtccacacacaaat |
136 |
Q |
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| T |
18007253 |
acttaaaaagatgggaactcaatcttagatccacatgctttgccttttgggaacacagggcagtcaatgaagtctgatccagaagtgtccacacacaagt |
18007154 |
T |
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| Q |
137 |
aaacttgatatagttgactgttgccagatgagtccacattacattcaatgaatggagaaaatccaactgcattttgtatagctcctttgatgttgctcaa |
236 |
Q |
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|||||||||| ||||| ||||| ||||| || ||||| ||||||||| |||||| | | |||| ||||||||||||||||||||||||| ||||||| |
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| T |
18007153 |
aaacttgataaagttggctgtttttggatgaatcaacattgcattcaatgtatggagtatacccaattgcattttgtatagctcctttgatgctgctcaa |
18007054 |
T |
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| Q |
237 |
gctgtaggaatttccatcaggttgyactcctgtcacaa |
274 |
Q |
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||||||| |||||||||||| | ||||| ||||| |
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| T |
18007053 |
agtgtaggatcctccatcaggttgtattcctgacacaa |
18007016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 18029769 - 18029704
Alignment:
| Q |
93 |
aggacagtcaatgaagtttgatccagaagtgtccacacacaaataaacttgatatagttgactgtt |
158 |
Q |
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| T |
18029769 |
aggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttggctgtt |
18029704 |
T |
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