View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125A-Insertion-12 (Length: 399)

Name: NF3125A-Insertion-12
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125A-Insertion-12
NF3125A-Insertion-12
[»] chr2 (4 HSPs)
chr2 (26-399)||(43603114-43603483)
chr2 (261-325)||(10231819-10231883)
chr2 (258-315)||(6863574-6863631)
chr2 (267-315)||(9529513-9529561)
[»] chr7 (4 HSPs)
chr7 (264-334)||(24547679-24547749)
chr7 (262-302)||(281741-281781)
chr7 (264-302)||(36853091-36853129)
chr7 (267-308)||(10889274-10889315)
[»] chr5 (3 HSPs)
chr5 (264-345)||(35035608-35035689)
chr5 (264-319)||(16230737-16230792)
chr5 (203-241)||(4076069-4076107)
[»] chr8 (6 HSPs)
chr8 (274-311)||(11189236-11189273)
chr8 (279-315)||(1319781-1319817)
chr8 (264-311)||(30011726-30011773)
chr8 (264-298)||(8172578-8172612)
chr8 (264-298)||(8173153-8173187)
chr8 (273-315)||(26815591-26815633)
[»] chr1 (1 HSPs)
chr1 (264-345)||(16979581-16979662)
[»] chr6 (1 HSPs)
chr6 (267-315)||(29872548-29872595)
[»] chr3 (1 HSPs)
chr3 (269-345)||(17069482-17069558)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 26 - 399
Target Start/End: Complemental strand, 43603483 - 43603114
Alignment:
Q  26 gttaatggaccaaaaatgttattatagatatatacaattaagtatgagagtaaaaccattaaataattattaggtaatgatgacttacattttataaata 125  Q
    |||||||||||||||||||||||||||||||||| || |     ||  |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  43603483 gttaatggaccaaaaatgttattatagatatataaaaat-----tgcaagtaaaaccagtaaataattattatgtaatgatgacttacattttataaata 43603389  T
Q  126 aataaatggttcgatgagtctaagaacgtgtatatgtgttaagaatagaattcataaacacttccatgttgtaatgattttttacactattaatcaatca 225  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43603388 aataaatggttaggtgagtctaagaacgtgtatatgtgttaagaatagaattcataaacacttccatgttgtaatgattttttacactattaatcaatca 43603289  T
Q  226 taagcgttagatcattaataatgtttgatttcaaatatttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgac 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43603288 taagcgttagatcattaataatgtttgatttcaaatatttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgac 43603189  T
Q  326 cgtgtatcacaattatactcgtatat-aagaaatattacggctatggaggcaattaaggtactatacttactgtc 399  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||    
T  43603188 cgtgtatcacaattatactcgtatataaaaaaatattacagctatggaggcaattaaggtactagacttactgtc 43603114  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 10231883 - 10231819
Alignment:
Q  261 tatttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgac 325  Q
    |||||||||||||||||||||||||| |||| || | | ||| |||||||||||| ||| |||||    
T  10231883 tatttctaaaatcacacatatgattgattgtaatatgtggacagtgtaaaactttttacactgac 10231819  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 6863574 - 6863631
Alignment:
Q  258 aaatatttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaacttt 315  Q
    ||||||||||||| ||||||| |||| | ||| |||||||||||  ||||||||||||    
T  6863574 aaatatttctaaagtcacacaaatgactcgttatgatttattgatagtgtaaaacttt 6863631  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 9529561 - 9529513
Alignment:
Q  267 taaaatcacacatatgattggttgtgatttattgacggtgtaaaacttt 315  Q
    |||| |||||||||||||||||||||||||  ||| | |||||||||||    
T  9529561 taaagtcacacatatgattggttgtgatttgctgatgatgtaaaacttt 9529513  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 24547749 - 24547679
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgaccgtgtatca 334  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  24547749 ttctaaaatcacagatatgattggttgtgatttattgacagtgtaaaactttttacactgacggtgtatca 24547679  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 281781 - 281741
Alignment:
Q  262 atttctaaaatcacacatatgattggttgtgatttattgac 302  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  281781 atttctaaaatcacatatatgattgattgtgatttattgac 281741  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 36853129 - 36853091
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttattgac 302  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  36853129 ttctaaagtcacacatatgattggttgtgatttactgac 36853091  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 10889274 - 10889315
Alignment:
Q  267 taaaatcacacatatgattggttgtgatttattgacggtgta 308  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  10889274 taaagtcacacatacaattggttgtgatttattgacggtgta 10889315  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 35035608 - 35035689
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgaccgtgtatcacaattatactc 345  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||| ||| ||  | ||| |||||||| ||||| ||||    
T  35035608 ttctaaaatcacacatatgattggttgtgatttactgacaatgtaaaattttttataccgacagtgtatcaaaattaaactc 35035689  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 16230792 - 16230737
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctac 319  Q
    ||||||||||| ||||||||||||||||||||| ||||  | | ||||||||||||    
T  16230792 ttctaaaatcaaacatatgattggttgtgatttgttgaaagggcaaaactttctac 16230737  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 4076107 - 4076069
Alignment:
Q  203 ttttttacactattaatcaatcataagcgttagatcatt 241  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  4076107 ttttttacactatcaatcaatcataatcgttagatcatt 4076069  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 11189236 - 11189273
Alignment:
Q  274 acacatatgattggttgtgatttattgacggtgtaaaa 311  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11189236 acacatatgattgtttgtgatttattgacggtgtaaaa 11189273  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 1319817 - 1319781
Alignment:
Q  279 tatgattggttgtgatttattgacggtgtaaaacttt 315  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1319817 tatgattggttgtgatgtattgacggtgtaaaacttt 1319781  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 30011773 - 30011726
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaa 311  Q
    ||||||||||||||||||||||| || |||||| ||||| ||||||||    
T  30011773 ttctaaaatcacacatatgattgattttgatttgttgacagtgtaaaa 30011726  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 8172578 - 8172612
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttat 298  Q
    |||||||||||||||||||||| ||||||||||||    
T  8172578 ttctaaaatcacacatatgatttgttgtgatttat 8172612  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 8173187 - 8173153
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttat 298  Q
    |||||||||||||||||||||| ||||||||||||    
T  8173187 ttctaaaatcacacatatgatttgttgtgatttat 8173153  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 26815591 - 26815633
Alignment:
Q  273 cacacatatgattggttgtgatttattgacggtgtaaaacttt 315  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||    
T  26815591 cacacatatgattgattgtgatttgttgaccgtgtaaaacttt 26815633  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 16979662 - 16979581
Alignment:
Q  264 ttctaaaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgaccgtgtatcacaattatactc 345  Q
    ||||||| ||||| ||||  ||||||||||||| ||||| ||||||| |||| ||| ||||| |||||||| ||||| ||||    
T  16979662 ttctaaagtcacatatattgttggttgtgatttgttgacagtgtaaatctttttacactgacagtgtatcaaaattaaactc 16979581  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 29872548 - 29872595
Alignment:
Q  267 taaaatcacacatatgattggttgtgatttattgacggtgtaaaacttt 315  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  29872548 taaagtcacacatatgattggttgtgattt-ttgacagtgtaaaacttt 29872595  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 17069558 - 17069482
Alignment:
Q  269 aaatcacacatatgattggttgtgatttattgacggtgtaaaactttctacgctgaccgtgtatcacaattatactc 345  Q
    ||||||||  ||| |||||||||||||||||||| |||| |||| || ||| ||| | |||||||| ||||| ||||    
T  17069558 aaatcacatttataattggttgtgatttattgacagtgtcaaacgttttacactggcagtgtatcaaaattaaactc 17069482  T

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