View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-13 (Length: 518)
Name: NF3125A-Insertion-13
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 274 - 506
Target Start/End: Complemental strand, 32790516 - 32790284
Alignment:
| Q |
274 |
atacaatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
373 |
Q |
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| T |
32790516 |
atacaatcctagatgcgtcaaattcgagctgaaattggtgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
32790417 |
T |
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| Q |
374 |
tttacctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
473 |
Q |
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| T |
32790416 |
tttgcctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
32790317 |
T |
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| Q |
474 |
actctgttgattgttaaggtaaatcctgatttt |
506 |
Q |
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| T |
32790316 |
actctgttgactgttaaggtaaatcctgatttt |
32790284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 32790779 - 32790584
Alignment:
| Q |
8 |
cattcttccctaaagacaaaaagaggtcaaattccagaattgcgcgcttaagcgccgcggttgaagcaaaggacaaagtatcgcaaaacaacaatgcctt |
107 |
Q |
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| T |
32790779 |
cattcttccctaaagacaaaaagagttcaaattccaggattgcgcgcttaagcgccgcggttgaagcaaaggacaaagtatcgcaaaacaacattgcctt |
32790680 |
T |
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| Q |
108 |
cacaaatttatttgaatttgaaaaccaaaaaatggaatacgtgagcccagaaggacttcgcttggatggtcgcagtcgcagacccatggaagtaggtact |
207 |
Q |
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| T |
32790679 |
cacaattttttttgaatttgaacaccaaaaaatggaatacgtgagcccagaaggacttcgcttggatggtc------gcagacccatggaagtaggtact |
32790586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48283734 - 48283665
Alignment:
| Q |
334 |
gatcgcatgaggaaaccgaagggcgacaggttatttcttatttacctgtttaattttccagtctttttgc |
403 |
Q |
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| T |
48283734 |
gatcgcatgaggaaaccaaagggcgacaggttatttcttatttacttgtttaatttcccagtctttttgc |
48283665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 48284308 - 48284253
Alignment:
| Q |
277 |
caatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatgg |
332 |
Q |
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|||||||||||||| ||||||||||| || |||| |||||||||||||||| |||| |
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| T |
48284308 |
caatcctagatgcgacaaattcgagcagagattggtgctgtatccaaagctgatgg |
48284253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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