View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-15 (Length: 220)
Name: NF3125A-Insertion-15
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-15 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 36767623 - 36767470
Alignment:
| Q |
8 |
tatgaaagctatgatgacacttccaactcggaagcataaagttgtttatgctatcaattgatttggtttatttttagggatagatttctaacaagcttaa |
107 |
Q |
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| T |
36767623 |
tatgaaagctatgatgacacttccaactcggaagcataaagttgtttatgctatcaattgatttggtttatttttagggatagatttctaacaagcttaa |
36767524 |
T |
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| Q |
108 |
aacttagtaaattctagtttgaggggcagtgttttgagtttatattatgatatg |
161 |
Q |
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| T |
36767523 |
aacttcgtaatttttagtttgaggggcagtgttttgagtttataccatgatatg |
36767470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 2071819 - 2071716
Alignment:
| Q |
53 |
ttatgctatcaattgatttggtttatttttagggatagatttctaacaagcttaaa-acttagtaaattctagtttgaggggcagtgttttgagtttata |
151 |
Q |
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| T |
2071819 |
ttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgaggggtagtgttacaagtttata |
2071720 |
T |
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| Q |
152 |
ttat |
155 |
Q |
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|||| |
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| T |
2071719 |
ttat |
2071716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 2075349 - 2075246
Alignment:
| Q |
53 |
ttatgctatcaattgatttggtttatttttagggatagatttctaacaagcttaaa-acttagtaaattctagtttgaggggcagtgttttgagtttata |
151 |
Q |
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| T |
2075349 |
ttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgaggggtagtgttacaagtttata |
2075250 |
T |
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| Q |
152 |
ttat |
155 |
Q |
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|||| |
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| T |
2075249 |
ttat |
2075246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 36767419 - 36767386
Alignment:
| Q |
175 |
gtttgaaaacctctcgatgttcccgttgttgtgt |
208 |
Q |
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| T |
36767419 |
gtttgaaaaactctcgatgttcccgttgttgtgt |
36767386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 154761 - 154713
Alignment:
| Q |
68 |
atttggtttatttttagggatagatttctaacaagcttaaaacttagtaa |
117 |
Q |
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| T |
154761 |
atttggtttatttttagggtta-atttgtaacaaacttaaaacttagtaa |
154713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 28063287 - 28063222
Alignment:
| Q |
53 |
ttatgctatcaattgatttggtttatttttagggatagatttctaacaagcttaaaacttagtaaa |
118 |
Q |
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| T |
28063287 |
ttatgctatcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaaa |
28063222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 27315079 - 27315139
Alignment:
| Q |
58 |
ctatcaattgatttggtttatttttag-ggatagatttctaacaagcttaaaacttagtaa |
117 |
Q |
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||||||| |||||| |||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
27315079 |
ctatcaactgatttagtttattttttttggataaatttgtaacaagcttaaaacttagtaa |
27315139 |
T |
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