View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3125A-Insertion-2 (Length: 791)
Name: NF3125A-Insertion-2
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 157 - 510
Target Start/End: Complemental strand, 33422610 - 33422255
Alignment:
| Q |
157 |
ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatctgtggtca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33422610 |
ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatttgtggtca |
33422511 |
T |
|
| Q |
257 |
atgtttgctttgggcacagcaacaataactgtatctttcttttcacctttcttgaagaaaatgactgttggaatacttcaaatcccataccgagtagctg |
356 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
33422510 |
atgtt-gcttttggcacagcaccaataactgtatctttcttttcaccgttcttgaagaaaatgacagttggaatacttcgaatcccataccgagtagcaa |
33422412 |
T |
|
| Q |
357 |
ttgaaggactttcatcagtat---gtttgtaacacttgagcttaccagcatattcctttgctagctcatcaattatgggacgaatcatacggcagggacc |
453 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33422411 |
ctgaaggactttcatcagtgttgagtttgtaacacttgagcttacccgcatattcctttgctagctcatcaattatgggatgaatcatgcggcagggacc |
33422312 |
T |
|
| Q |
454 |
acatcatggagcacagaattcgatcaacacaggagtctcagattctaagacaaggga |
510 |
Q |
| |
|
||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
33422311 |
acaccatggagcccagaattcgaccaacacaggagtctcagattctatgacaaggga |
33422255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 553 - 757
Target Start/End: Complemental strand, 33422187 - 33421979
Alignment:
| Q |
553 |
aaatttcactcatatatacaattctctgaaaacaaatcagaagatagttagaactttgatcacac--tacacatttacagtgatgtgaaatcctccacgg |
650 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||||||| |||| ||||||||||||| | || ||||||| |||| ||||||| | |
|
|
| T |
33422187 |
aaatttcactcagatatacaattctccgaaaacaaatgagaagatggttaaaactttgatcacaaattgcaaatttacaaagatgcaaaatcctgatcta |
33422088 |
T |
|
| Q |
651 |
caaaa--catgcaaacgagatgataaatgcatcaaaaaattgaaaaccataaatggcagcccagtgcgcc-agctgccatcaattgcagtctgagaaagg |
747 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
33422087 |
aaaaaagcatgcaaaccagatgataaatgcatccaaaaattgaaaaacataaat-gcagctcagtgcgccaagctctcattaattgcagtctgagaaagg |
33421989 |
T |
|
| Q |
748 |
tagatgtaca |
757 |
Q |
| |
|
|||||||||| |
|
|
| T |
33421988 |
tagatgtaca |
33421979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 33858482 - 33858439
Alignment:
| Q |
32 |
cttgttctttgcttctgctgtgttttgtaacagaaggcaggact |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33858482 |
cttgttctttgcttctgctgtgttttgtaacagaaggcaggact |
33858439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 266 - 474
Target Start/End: Complemental strand, 20543679 - 20543468
Alignment:
| Q |
266 |
ttgggcacagcaacaataactgtatctttcttttcacctttcttgaagaaaatgactgttggaatacttcaaatcccataccgagtagctgttgaaggac |
365 |
Q |
| |
|
||||||||||| |||||||||| ||||| || ||||| | ||||||| || ||||| |||||||||| ||| || ||||| ||||| |||||||||| |
|
|
| T |
20543679 |
ttgggcacagctccaataactgtgtcttttttctcaccatctttgaagatcataactgtcggaatacttcgaattccgtaccgggtagcagttgaaggac |
20543580 |
T |
|
| Q |
366 |
tttcatcagtat---gtttgtaacacttgagcttaccagcatattcctttgctagctcatcaattatgggacgaatcatacggcagggaccacatcatgg |
462 |
Q |
| |
|
| ||||| |||| |||||||||||||||| || || | ||||| ||||||| ||||||||||| || ||||| | ||| |||||||| ||||| |
|
|
| T |
20543579 |
tctcatcggtattgagtttgtaacacttgagttttcccgtatattgtattgctagttcatcaattataggggtgatcattctgcatggaccacaccatgg |
20543480 |
T |
|
| Q |
463 |
agcacagaattc |
474 |
Q |
| |
|
||| |||||||| |
|
|
| T |
20543479 |
agcccagaattc |
20543468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 16989885 - 16989933
Alignment:
| Q |
75 |
ttgttttgttgtaacagctagcctctttttgcacttctggtgcttggctt |
124 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
16989885 |
ttgtttggttgtaacagctagc-tcttttagcacttccggtgcttggctt |
16989933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University