View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-3 (Length: 824)
Name: NF3125A-Insertion-3
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 32595130 - 32595549
Alignment:
| Q |
7 |
atatgggacatgcatactttaattttgtacaataagcaatgcaccttatggtcatagcatggtgtccttctaagcaatccaaagaacatatccaaaatat |
106 |
Q |
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| T |
32595130 |
atatgggacatgcatactttaattttgtacaataagcaatgcaccttatggtcatagcatggtgtccttctaagcaatccaaagaacatatccaaaatat |
32595229 |
T |
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| Q |
107 |
aatttattcatctttccgtcataatttatcatttatttttgtcaatttagtgcatatataaaatccaattctacttttagtattttcttaggtatgtatc |
206 |
Q |
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| T |
32595230 |
aatttattcatctttccgtcataatttatcatttatttttgtcaatttagtgcatatataaaatccaattctacttttagtattttcttaggtatgtatc |
32595329 |
T |
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| Q |
207 |
tagccnnnnnnngttttgacagaatctagacatctttggtttatgcatatcttattatcattaagtttttcatgttgaaattgttaagtggtaggctaat |
306 |
Q |
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| T |
32595330 |
tagcc-ttttttgttttgacggaatctagacatctttggtttatgcatatcttattatcattaagtttttcatgttgaaattgttaagtggtagactaat |
32595428 |
T |
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| Q |
307 |
atgattgtttacaacttggctagagtgac--tataatgcatgctagctctaagactttctatatgtattcgtcatttgattcttaatgaaatgaagcagt |
404 |
Q |
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| T |
32595429 |
atgattgtttacaacttggctagagtgactatataatgcatgctagctctaagactttctatatgtattcgtcatttgattcttaatgaaatgaagcagt |
32595528 |
T |
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| Q |
405 |
tctattattgtcgacaagaag |
425 |
Q |
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| T |
32595529 |
tctattattgtcgacaagaag |
32595549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 487 - 823
Target Start/End: Original strand, 32595620 - 32595960
Alignment:
| Q |
487 |
aaattccaattttagtttgatgttaaacacaatggtgaacactnnnnnnnttaattgaataatagccaaatatagaa-tcaatcggattcaacctatcaa |
585 |
Q |
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| T |
32595620 |
aaattccaattttagtttgatgttaaacacaatggcgaacactaaaaaaattaattgaataatcgccaaatatagaaatcaatcggattcaacctattaa |
32595719 |
T |
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| Q |
586 |
taaggagttaaaatcttatctatttctgaaaagaaatgaagaattcaataggagagatatatacacaaaaaatagacattacatcgagatcaagcttgat |
685 |
Q |
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| T |
32595720 |
taaggagttaaaatcttatctatttctcaaaagaaatgaagaattcaataggagagatatatacacaaaaaatagacattacgtcgagatcaagcctgat |
32595819 |
T |
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| Q |
686 |
caaattaagggaattagtcaatgtagagtttttcgagaccaaaataccagagtttagatatctct---nnnnnnnntgtttgtttagtcaaattaaccat |
782 |
Q |
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| T |
32595820 |
caaattaa-ggaattagtcaatgtagagttttccgagatcaaaatatcagagtatagatatctctaaaaaaaaaaaagtttgtttagtcaaattaaccat |
32595918 |
T |
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| Q |
783 |
gttataggacttgaaa-taaacatgttatggtcaaaatcgtg |
823 |
Q |
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| T |
32595919 |
gctataggacttgaaattaaccatgttatggtcaaaatcgtg |
32595960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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