View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-4 (Length: 844)
Name: NF3125A-Insertion-4
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Complemental strand, 31516945 - 31516288
Alignment:
| Q |
8 |
ggagaagcaattctcgaagctttttcgttcgatccaattccaaacgaagttaagttatggaatcgatcctcgcaagagcattggaatacacgctcaaata |
107 |
Q |
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| T |
31516945 |
ggagaagcaattctcgaagctttttcgttcgatccaattccaaacgaagctaagttatggaatcgatcctcgcaagagcattggaatacacgctcaaata |
31516846 |
T |
|
| Q |
108 |
ctggctcaaatcattcaccagagaccaattcaagttacagggtcgcaccgttcagctttctaatttaggtcatttccctttaatttccattcaaatctca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31516845 |
ctggctcaaatcattcaccagagaccaattcaagttacagggtcgcactgttcagctttctaatttaggtcatttccctctaatttccattcaaatctca |
31516746 |
T |
|
| Q |
208 |
aaattactgttaatcatcacaatgattcgtttgtttttgaatttcctgtattcagatataaacggtgatgcattacattccagcattggatttccgcctg |
307 |
Q |
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| T |
31516745 |
aaattactgttaatcatcacaatgattcgtttgtttttgaatttcctgtattcagatataaacggtgatgcattacattccagcattggatttccgcctg |
31516646 |
T |
|
| Q |
308 |
cactcaatgtcaccaccgccaaagtcggaaaattggaaatcaaggttcgggttcttgttgatgtttaatttcttagaattgcatgaaaaatacgtgtnnn |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516645 |
cactcaatgtcaccaccgccaaagtcggaaaattggaaatcaaggttcggattcttgttgatgtttaatttcttagaattgcatgaaaaatacgtgtaaa |
31516546 |
T |
|
| Q |
408 |
nnnnttgtcgtttttcacgcttaatc-aataactttcattgttgtaatctaagcagttactcactctataatgaaatataagcaaaaattgta------- |
499 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516545 |
aaaattgtcgtttttcgcgcttaatcaaataactttcattgttgtaatctaagcagttactcactctataatgaaatataagcaaaaattgtatgtttaa |
31516446 |
T |
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| Q |
500 |
----tgtcttttttagtaataattgtaatttacgagtatgcatctacatttgtttttccagcattttctttgagttcttagaaatatggactcgaaatta |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31516445 |
ctattgtcttttttagtaataattgtaatttacgagtatgcatccacatttgtttttccagcattttctttgagttcttagaaatatggactcgaaattg |
31516346 |
T |
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| Q |
596 |
gaacaagatgatatactttttaattatyattagtaaaagaaagtagaccaagctccacc |
654 |
Q |
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| T |
31516345 |
gaacaagatgatatac-ttttaattattattagtaaaagaaagtagaccacgctccacc |
31516288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 738 - 844
Target Start/End: Complemental strand, 31516204 - 31516095
Alignment:
| Q |
738 |
tctttgtagctaccgtcggtgagcaatgtacagacagagcc-atcattgtgcaaattgataggcttgatatggttc-tgaggag-attctgattttaaac |
834 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31516204 |
tctttgtagctaccgtcggtgagcaatgtacagacagagccaatcattgtacaaattgataggcttgatatggttcttgaggagaattctgattttaaac |
31516105 |
T |
|
| Q |
835 |
cacccgagac |
844 |
Q |
| |
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|||||||||| |
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| T |
31516104 |
cacccgagac |
31516095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 34763452 - 34763538
Alignment:
| Q |
91 |
gaatacacgctcaaatactggctcaaatcattcaccagagaccaattcaagttacagggtcgcaccgttcagctttctaatttaggt |
177 |
Q |
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|||||||| |||||||| ||||||||||| ||||| ||||| || ||||| || || || | ||||||||| ||||| ||||||||| |
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| T |
34763452 |
gaatacactctcaaatattggctcaaatctttcactagagatcagttcaaattgcatggccacaccgttcacctttccaatttaggt |
34763538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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