View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-5 (Length: 553)
Name: NF3125A-Insertion-5
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-5 |
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| [»] scaffold1636 (1 HSPs) |
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Alignment Details
Target: scaffold1636 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 263 - 553
Target Start/End: Complemental strand, 797 - 507
Alignment:
| Q |
263 |
tgtcttcttcatttcacaaactccaagcctttccctaagcttgcaaaaactctccaacttcaagggttttgtgaagatgtcagccaactggttttctgaa |
362 |
Q |
| |
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||||||||||| ||| | |||||||| ||| |||| | |||||| |||||||||| ||| ||||| || |||||||||| ||||| |||||| |||||| |
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| T |
797 |
tgtcttcttcacctcatagactccaagtcttgcccttaacttgcagaaactctccagctttaagggcttggtgaagatgttagccatctggttctctgaa |
698 |
T |
|
| Q |
363 |
gtacaatgcatcaattcaattgttccatcctttgtaagatacctcaagaaa-tggtatctaacatctatatgtttgcatcttccatgcaatacaagattc |
461 |
Q |
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| |||| | | ||| ||||| |||||||| |||||||||| |||||| ||| || || || ||||||||||||||||||||||||||||| | | |||| |
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| T |
697 |
gcacaa-gaaccaactcaatcgttccatcttttgtaagatccctcaaaaaagtgatacctcacatctatatgtttgcatcttccatgcaaaatagaattc |
599 |
T |
|
| Q |
462 |
ttggacaacttgatggatgaactgttatcacaatagattttggtgcagctcctttgagtttgatagagatgatgaagtatcttcctaagcca |
553 |
Q |
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| T |
598 |
ttggacaacttaatagatgaactgttatcacaatagattttggtgcagctcctttgagtttgaaagagatgatgaagtatctttcttagcca |
507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 260 - 382
Target Start/End: Original strand, 7848914 - 7849036
Alignment:
| Q |
260 |
ttctgtcttcttcatttcacaaactccaagcctttccctaagcttgcaaaaactctccaacttcaagggttttgtgaagatgtcagccaactggttttct |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7848914 |
ttctgtcttcttcatttcacaaactccaagcctttccctaagcttgcaaaaactctccaacttcaagggttttgtgaagatgtcagccaactggttttct |
7849013 |
T |
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| Q |
360 |
gaagtacaatgcatcaattcaat |
382 |
Q |
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| T |
7849014 |
gaagtacaatgcatcaattcaat |
7849036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 7848721 - 7848847
Alignment:
| Q |
70 |
atgtggtaatccactcaatgttatttcattaagagcctagcctttatataggcaa--ggtacaaagcgtgtgttgcaagcagcaacaacactaaacacac |
167 |
Q |
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|||||||||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| |
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| T |
7848721 |
atgtggtaatacactctctgttatttcattaagagcttagcctttatataggcaataggtacaaagcatgtgttgctagcagcaactacactaaacacac |
7848820 |
T |
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| Q |
168 |
ttaacaaacactcccttaatctgagct |
194 |
Q |
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| T |
7848821 |
ttaacaaacactcccttaatctgagct |
7848847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 477 - 553
Target Start/End: Original strand, 7849038 - 7849114
Alignment:
| Q |
477 |
gatgaactgttatcacaatagattttggtgcagctcctttgagtttgatagagatgatgaagtatcttcctaagcca |
553 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7849038 |
gatgaactgttatcacaatagattttggtgcagctcctttgagtttgatagagatgatgaagtatcttcttaagcca |
7849114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 7853016 - 7853118
Alignment:
| Q |
73 |
tggtaatccactcaatgttatttcattaagagcctagcctttatataggcaa--ggtacaaagcgtgtgttgcaagcagcaacaacactaaacacactta |
170 |
Q |
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||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7853016 |
tggtaatacactctctgttatttcattaagagcttagcctttatataggcaataggtacaaagcgtgtgttgcaagcagcaactacactaaacacactta |
7853115 |
T |
|
| Q |
171 |
aca |
173 |
Q |
| |
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||| |
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|
| T |
7853116 |
aca |
7853118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 450
Target Start/End: Original strand, 9938672 - 9938708
Alignment:
| Q |
414 |
tggtatctaacatctatatgtttgcatcttccatgca |
450 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||| |
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| T |
9938672 |
tggtatctcacatctatatgtttgcatctcccatgca |
9938708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 263 - 535
Target Start/End: Original strand, 46430568 - 46430840
Alignment:
| Q |
263 |
tgtcttcttcatttcacaaactccaagcctttccctaagcttgcaaaaactctccaacttcaagggttttgtgaagatgtcagccaactggttttctgaa |
362 |
Q |
| |
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|||||| |||||| |||||||||||||| | |||| | ||||| |||||||| | |||||| ||||| || ||||||||||||| || |||||||||| |
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| T |
46430568 |
tgtcttattcattacacaaactccaagcttagccctcaatttgcagaaactctctagcttcaaaggtttagtaaagatgtcagccatctagttttctgaa |
46430667 |
T |
|
| Q |
363 |
gtacaatgcatcaattcaattgttccatcctttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattct |
462 |
Q |
| |
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|||||||||| ||| | |||||||||| | |||||||||| |||||| ||||| |||||||||| || |||||||| ||||||||||| | | |||||| |
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| T |
46430668 |
gtacaatgcaccaacttaattgttccagcttttgtaagatccctcaaaaaatgaaatctaacatcaatgtgtttgcaccttccatgcaaaataggattct |
46430767 |
T |
|
| Q |
463 |
tggacaacttgatggatgaactgttatcacaatagattttggtgcagctcctttgagtttgatagagatgatg |
535 |
Q |
| |
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| T |
46430768 |
ttgacagcttaatggatgaactgttgtcacagaagattttggtgcagttcctttgagtttgacagagatgatg |
46430840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 380 - 509
Target Start/End: Complemental strand, 609697 - 609568
Alignment:
| Q |
380 |
aattgttccatcctttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatggat |
479 |
Q |
| |
|
||||||| |||| |||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||| | | ||||||| |||||||| || ||| |
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|
| T |
609697 |
aattgtttcatcttttgaaagatccctcaagaaatgatatctaacatctatctgtttgcatcttccatgcataataggattctttgacaacttaatagat |
609598 |
T |
|
| Q |
480 |
gaactgttatcacaatagattttggtgcag |
509 |
Q |
| |
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|| ||||||||||||| || ||||||||| |
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| T |
609597 |
gagttgttatcacaataaatcttggtgcag |
609568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 450
Target Start/End: Complemental strand, 50495307 - 50495223
Alignment:
| Q |
366 |
caatgcatcaattcaattgttccatcctttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgca |
450 |
Q |
| |
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||||||| ||| |||| | |||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
50495307 |
caatgcaccaactcaactattccatcctttgtaaggtctctcaagaaatgatatctgacatctatatgtttgcatcttccatgca |
50495223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 508
Target Start/End: Complemental strand, 42971916 - 42971819
Alignment:
| Q |
411 |
aaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatggatgaactgttatcacaatagattttggtgca |
508 |
Q |
| |
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||||||||||||||||| || ||||||||||| ||||||| | | |||| || |||| ||| ||||| ||||| |||||||| || || |||||||| |
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|
| T |
42971916 |
aaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatggaagaactattatcacagtaaatcttggtgca |
42971819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 26816629 - 26816683
Alignment:
| Q |
8 |
gaatcatggtataatatcactttagtttatttgttccaaaaatatcttaccaaat |
62 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
26816629 |
gaatcacggtataatatcactttagtttatttgttcctaaaatatcttatcaaat |
26816683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 493
Target Start/End: Original strand, 30967116 - 30967216
Alignment:
| Q |
393 |
tttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatggatgaactgttatcac |
492 |
Q |
| |
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|||||||||| ||| | || ||||||||||||||||||||||| || | |||||||||||| |||| |||| || || || |||||||| ||||||| |
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| T |
30967116 |
tttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagatgaactattatcac |
30967215 |
T |
|
| Q |
493 |
a |
493 |
Q |
| |
|
| |
|
|
| T |
30967216 |
a |
30967216 |
T |
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