View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125A-Insertion-9 (Length: 776)
Name: NF3125A-Insertion-9
Description: NF3125A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125A-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 168 - 519
Target Start/End: Complemental strand, 34332850 - 34332511
Alignment:
| Q |
168 |
tcttaaacactcatactttatctttttattcatttccatctatgcaatgcacacatcacacacaatagnnnnnnnacattgcttcaagttaggtttttac |
267 |
Q |
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| T |
34332850 |
tcttaaacactgatactttatctttttattcatttccatccatgcaatgcacacatcacacacaatactttttttacattgcttcaagttaggtttttac |
34332751 |
T |
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| Q |
268 |
tctttgctataatgattctcatagacgagcaaaaataga-aaaataaacctataagaactcggattaatttaacttcgtaaaattgactcataaaaaata |
366 |
Q |
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| T |
34332750 |
tctttgctataatgattctcatagaagagcaaaaatagaaaaaataaacctataagaactcggtttaatttaacttcg-------------taaaaaata |
34332664 |
T |
|
| Q |
367 |
tcacgaacgaacatctagagtgtgatttgatgacgcagtaacggggtgatccnnnnnnntctaagataaactttaatgtcatattataatttgggtttaa |
466 |
Q |
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| T |
34332663 |
ttacgaacgaacatctagagtgtgatttgatgacagagtaacgggatgatccaaatttttttaatataaactttaatatcatattataatttcggtttat |
34332564 |
T |
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| Q |
467 |
gccaattactctttcttttttacttaacctaaatgaaggttaaaaactactac |
519 |
Q |
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| T |
34332563 |
gcctattactctttcttttttacttaacctaaatcaatcttaaaaactactac |
34332511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 591 - 775
Target Start/End: Complemental strand, 34332047 - 34331864
Alignment:
| Q |
591 |
tttcacacaaaaaaggcatgatcatttgaggatgtgaccgtacataggactcggggtccatacaaaatggtgcctcattggtgaaggctttctatttttc |
690 |
Q |
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| T |
34332047 |
tttcccacaaaaaaggcatgatcatttggagatgtgaccgtacataggactcggggtccatacaaaatggtgcctcattggtgaaggctttctatttttc |
34331948 |
T |
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| Q |
691 |
cttctatcaagcaaagggtgagtgacccccacagtgacatatcaagaaatcttgtattagtaggaagcgtgatcaagctagtagc |
775 |
Q |
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| T |
34331947 |
cttctatcaagcaaagggtgggtga-ccccacagtgacatatcaagaaatcttgtattagtaggaagcgtgatcaagctagtagc |
34331864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 34333009 - 34332881
Alignment:
| Q |
8 |
aaaaccgatcaagagtagtcagtagttttcagtacctactcttggaagcacgcaagccttaaagagttgttgattttgttgcttctgctttccgaacttg |
107 |
Q |
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| T |
34333009 |
aaaaccgatcaagagtagtcagtagttttcagtacctactcttggaagcacgcaagccttaaagagttgttgattttgttgcttctgc-ttctgaacttg |
34332911 |
T |
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| Q |
108 |
caaatttctgtgtattattcggtacacgag |
137 |
Q |
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| T |
34332910 |
caaatttctgtgtattattcggtacacgag |
34332881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 595
Target Start/End: Complemental strand, 34332224 - 34332176
Alignment:
| Q |
547 |
ataaggaatatctcctacacatttaaaattatttataaataaattttca |
595 |
Q |
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|||| ||||||||| | |||||||||||||||||||||||| ||||||| |
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| T |
34332224 |
ataatgaatatctcatgcacatttaaaattatttataaatacattttca |
34332176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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